RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA683669 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5768609 5768609 PRJNA683669_P_NODE_28685_length_248_cov_0.880000_g28453_i0 PRJNA683669 28685 248 0.88 2.1824 Deinococcota bacterium DY0809b 3396280 Bacteria Bacteria 165 2.76e-36   NTclustered gi|2904223141|gb|CP179936.1| 3396280 g28453 i0 81.308 76.1612903225806 214 31 85 7 20 230 418789 418582 Deinococcota bacterium DY0809b chromosome, complete genome blastn 18888 165 1 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium DY0809b
12144356 12144356 PRJNA683669_P_NODE_24690_length_259_cov_1.268817_g24458_i0 PRJNA683669 24690 259 1.268817 3.28623603 Deinococcus ficus 317577 Bacteria Bacteria 89.8 1.8e-13   NTclustered gi|1220362168|gb|CP021081.1| 317577 g24458 i0 83.673 1.36679536679537 98 12 37 3 144 239 1829819 1829724 Deinococcus ficus strain CC-FR2-10, complete genome blastn 354 89.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;