RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA683669 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12144347 12144347 PRJNA683669_P_NODE_23950_length_264_cov_1.209424_g23718_i0 PRJNA683669 23950 264 1.209424 3.19287936 Avihepadnavirus anatigruidae 3426542 Viruses Viruses 460 3.3799999999999995e-125   NTclustered gi|2482564023|gb|OQ183618.1| 12639 g23718 i0 98.106 99.7537878787879 264 5 100 0 1 264 2773 2510 Duck hepatitis B virus strain E200529, complete genome blastn 26335 460 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Blubervirales Hepadnaviridae Avihepadnavirus Avihepadnavirus anatigruidae
16477696 16477696 PRJNA683669_P_NODE_22113_length_276_cov_1.118227_g21881_i0 PRJNA683669 22113 276 1.118227 3.08630652 Gammaretrovirus 153135 Viruses Viruses 499 7.54e-137   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g21881 i0 99.275 19.8333333333333 276 2 100 0 1 276 4827 5102 Moloney murine leukemia virus, complete genome blastn 5474 499 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;