RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA683669" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA683669 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15967723 15967723 PRJNA683669_P_NODE_28173_length_248_cov_1.760000_g27941_i0 PRJNA683669 28173 248 1.76 4.3648 Vermiphilus pyriformis 1763547 Bacteria Bacteria 459 1.13e-124   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g27941 i0 100 71.6209677419355 248 0 100 0 1 248 974277 974030 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 17762 459 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis
22342251 22342251 PRJNA683669_P_NODE_22658_length_272_cov_1.407035_g22426_i0 PRJNA683669 22658 272 1.407035 3.8271352 Vermiphilus pyriformis 1763547 Bacteria Bacteria 497 2.67e-136   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g22426 i0 99.632 74.5073529411765 272 1 100 0 1 272 974675 974404 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 20266 497 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;