RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682774" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA682774 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4492575 4492575 PRJNA682774_P_NODE_2504_length_289_cov_2.166667_g2475_i0 PRJNA682774 2504 289 2.166667 6.26166763 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 180 1.18e-40   NTclustered gi|669159439|ref|XM_008617060.1| 1156394 g2475 i0 78.246 48.9031141868512 285 58 98 4 4 286 451 169 Saprolegnia diclina VS20 60S ribosomal protein mRNA blastn 14133 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
17242615 17242615 PRJNA682774_P_NODE_5154_length_243_cov_0.917647_g5125_i0 PRJNA682774 5154 243 0.917647 2.22988221 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 246 9.36e-61   NTclustered gi|813170664|ref|XM_012348698.1| 695850 g5125 i0 85.062 96.8395061728395 241 36 99 0 2 242 410 170 Saprolegnia parasitica CBS 223.65 tubulin alpha chain mRNA blastn 23532 246 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22852163 22852163 PRJNA682774_P_NODE_5178_length_243_cov_0.917647_g5149_i0 PRJNA682774 5178 243 0.917647 2.22988221 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 213 9.49e-51   NTclustered gi|156986897|gb|EU080062.1| 4788 g5149 i0 83.122 97.0452674897119 237 36 97 2 9 243 1707 1473 Phytophthora megasperma isolate PD_00017(P3136) heat shock protein 90 (HSP90) gene, partial cds blastn 23582 213 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;