RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA682774" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682774 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12144023 12144023 PRJNA682774_P_NODE_3550_length_252_cov_1.307263_g3521_i0 PRJNA682774 3550 252 1.307263 3.29430276 Diplogastrellus gracilis 669117 Nematoda Nematoda 200 7.709999999999998e-47   NTclustered gi|256709330|gb|GQ422340.1| 669117 g3521 i0 82.883 31.3809523809524 222 38 88 0 31 252 403 182 Diplogastrellus gracilis large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 7908 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
12144047 12144047 PRJNA682774_P_NODE_5050_length_244_cov_0.912281_g5021_i0 PRJNA682774 5050 244 0.912281 2.22596564 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 100 7.75e-17   NTclustered gi|150982147|gb|EF634662.1| 452809 g5021 i0 85 23.9795081967213 100 13 41 2 84 182 300 398 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 5851 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;