RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682774" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682774 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4492581 4492581 PRJNA682774_P_NODE_3184_length_261_cov_1.244681_g3155_i0 PRJNA682774 3184 261 1.244681 3.24861741 Polychytrium aggregatum 110093 Fungi Fungi 89.8 1.81e-13   NTclustered gi|2432155304|ref|XM_053111518.1| 110093 g3155 i0 90.909 0.252873563218391 66 6 25 0 116 181 318 253 Polychytrium aggregatum ribosomal L27e protein family-domain-containing protein (BJ171DRAFT_510919), mRNA blastn 66 89.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10868629 10868629 PRJNA682774_P_NODE_1789_length_334_cov_1.195402_g1760_i0 PRJNA682774 1789 334 1.195402 3.99264268 Spizellomyces punctatus 109760 Fungi Fungi 152 3.0199999999999997e-32   NTclustered gi|1026980085|ref|XM_016752373.1| 645134 g1760 i0 83.234 2.46107784431138 167 27 50 1 16 182 346 181 Spizellomyces punctatus DAOM BR117 40S ribosomal protein S15 (SPPG_04127), mRNA blastn 822 152 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
23617579 23617579 PRJNA682774_P_NODE_759_length_495_cov_1.466825_g730_i0 PRJNA682774 759 495 1.466825 7.26078375 Polychytrium aggregatum 110093 Fungi Fungi 355 3.29e-93   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g730 i0 83.871 69.8686868686869 372 60 75 0 124 495 580 209 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 34585 355 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;