RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682774" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA682774 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1940618 1940618 PRJNA682774_P_NODE_2302_length_299_cov_2.070796_g2273_i0 PRJNA682774 2302 299 2.070796 6.19168004 Thermosporothrix sp. COM3 2490863 Bacteria Bacteria 52.8 0.028   NTclustered gi|1606557374|dbj|AP019376.1| 2490863 g2273 i0 100 0.0936454849498328 28 0 9 0 59 86 1034982 1035009 Thermosporothrix sp. COM3 DNA, nearly complete genome blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Thermosporotrichaceae Thermosporothrix Thermosporothrix sp. COM3
5768287 5768287 PRJNA682774_P_NODE_3585_length_252_cov_0.871508_g3556_i0 PRJNA682774 3585 252 0.871508 2.19620016 Anaerolineales bacterium 2073117 Bacteria Bacteria 287 5.75e-73   NTclustered gi|2556899361|gb|CP129481.1| 2073117 g3556 i0 88.017 0.96031746031746 242 29 96 0 9 250 1780985 1780744 MAG: Anaerolineales bacterium isolate cMAG.15 chromosome, complete genome blastn 242 287 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
13418626 13418626 PRJNA682774_P_NODE_3871_length_251_cov_0.876404_g3842_i0 PRJNA682774 3871 251 0.876404 2.19977404 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 237 5.85e-58   NTclustered gi|2621704004|emb|OY762959.1| 2026734 g3842 i0 83.73 1.00398406374502 252 39 100 2 1 251 2537441 2537691 MAG: Dehalococcoidia bacterium isolate a8fc5444-7059-4be1-bdcb-92646be6befe genome assembly, chromosome: 1 blastn 252 237 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;