RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682774" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA682774 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3215471 3215471 PRJNA682774_P_NODE_4863_length_245_cov_0.906977_g4834_i0 PRJNA682774 4863 245 0.906977 2.22209365 Phycisphaerales bacterium 2052180 Bacteria Bacteria 159 1.27e-34   NTclustered gi|2108005054|gb|CP070772.1| 2052180 g4834 i0 79.821 0.910204081632653 223 41 90 4 18 238 685773 685993 MAG: Phycisphaerales bacterium isolate bin220 chromosome blastn 223 159 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
15967387 15967387 PRJNA682774_P_NODE_4813_length_245_cov_0.906977_g4784_i0 PRJNA682774 4813 245 0.906977 2.22209365 Akkermansia muciniphila 239935 Bacteria Bacteria 448 2.41e-121   NTclustered gi|2051367837|gb|CP072029.1| 239935 g4784 i0 99.592 65.0897959183673 245 1 100 0 1 245 1577096 1577340 Akkermansia muciniphila strain Akk1713 chromosome, complete genome blastn 15947 448 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
17242596 17242596 PRJNA682774_P_NODE_4154_length_249_cov_0.886364_g4125_i0 PRJNA682774 4154 249 0.886364 2.20704636 Akkermansia muciniphila 239935 Bacteria Bacteria 460 3.16e-125   NTclustered gi|2623926283|gb|CP137887.1| 239935 g4125 i0 100 95.6746987951807 249 0 100 0 1 249 318517 318765 Akkermansia muciniphila strain SDLYAKK5 chromosome, complete genome blastn 23823 460 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;