RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA682370" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA682370 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3215076 3215076 PRJNA682370_S_NODE_19223_length_164_cov_3.379845_g18611_i0 PRJNA682370 19223 164 3.379845 5.5429458 Phytophthora afrocarpa 2843340 SAR_Eukaryotes SAR_Eukaryotes 185 1.2899999999999997e-42   NTclustered gi|2049963265|gb|MT762326.1| 2843340 g18611 i0 87.117 98.4878048780488 163 21 99 0 1 163 370 208 Phytophthora afrocarpa isolate CMW54635 beta-tubulin (BTUB) gene, partial cds blastn 16152 185 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora afrocarpa
5003094 5003094 PRJNA682370_S_NODE_724_length_986_cov_3.228181_g406_i0 PRJNA682370 724 986 3.228181 31.82986466 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 527 1.3599999999999994e-144   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g406 i0 77.972 67.6957403651116 917 150 92 33 1 903 1854 2732 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 66748 527 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;