RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682370" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682370 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8317593 8317593 PRJNA682370_S_NODE_4747_length_367_cov_5.090361_g4135_i0 PRJNA682370 4747 367 5.090361 18.68162487 Caenorhabditis remanei 31234 Nematoda Nematoda 195 5.4699999999999995e-45   NTclustered gi|2445382034|ref|XM_003114158.2| 31234 g4135 i0 78.689 17.8147138964578 305 55 82 9 54 353 357 58 Caenorhabditis remanei uncharacterized protein (GCK72_018257), partial mRNA blastn 6538 195 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
18516533 18516533 PRJNA682370_S_NODE_4195_length_394_cov_2.615599_g3584_i0 PRJNA682370 4195 394 2.615599 10.30546006 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 8.1e-4   NTclustered gi|690018549|emb|LM525787.1| 174720 g3584 i0 94.595 0.0939086294416244 37 2 9 0 357 393 36860 36824 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000172 blastn 37 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
21066720 21066720 PRJNA682370_S_NODE_17277_length_172_cov_2.058394_g16665_i0 PRJNA682370 17277 172 2.058394 3.54043768 Caenorhabditis elegans 6239 Nematoda Nematoda 178 2.2799999999999998e-40   NTclustered gi|6623|emb|X16796.1| 6239 g16665 i0 85.38 31.5290697674419 171 25 99 0 2 172 605 435 C.elegans act1 gene blastn 5423 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;