RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682370" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA682370 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10868290 10868290 PRJNA682370_S_NODE_19269_length_164_cov_1.976744_g18657_i0 PRJNA682370 19269 164 1.976744 3.24186016 Dictyostelium discoideum 44689 Evosea other_Eukaryota 54.7 0.004   NTclustered gi|111226590|ref|XM_636082.2| 352472 g18657 i0 96.875 0.365853658536585 32 1 20 0 76 107 386 417 Dictyostelium discoideum AX4 Ras GTPase (DDB_G0280437) mRNA, complete cds blastn 60 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17242272 17242272 PRJNA682370_S_NODE_22234_length_155_cov_1.725000_g21622_i0 PRJNA682370 22234 155 1.725 2.67375 Acytostelium subglobosum 361139 Evosea other_Eukaryota 135 1.23e-27   NTclustered gi|831754058|ref|XM_012892546.1| 1410327 g21622 i0 82.895 3.4258064516129 152 24 97 2 1 151 640 490 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 531 135 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
21066565 21066565 PRJNA682370_S_NODE_10597_length_224_cov_1.825397_g9985_i0 PRJNA682370 10597 224 1.825397 4.08888928 Heterostelium album 2086695 Evosea other_Eukaryota 244 3.0599999999999997e-60   NTclustered gi|1160551744|ref|XM_020571206.1| 670386 g9985 i0 86.667 92.5446428571429 225 24 99 6 3 224 1805 2026 Polysphondylium pallidum PN500 heat shock protein (hspB), partial mRNA blastn 20730 244 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;