RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA682370" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA682370 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4492490 4492490 PRJNA682370_S_NODE_7804_length_271_cov_3.165254_g7192_i0 PRJNA682370 7804 271 3.165254 8.57783834 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 52.8 0.025   NTclustered gi|1624757229|ref|XM_029029543.1| 67003 g7192 i0 94.286 0.129151291512915 35 1 13 1 44 77 2142 2176 Trypanosoma theileri uncharacterized protein (TM35_000381290), partial mRNA blastn 35 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
17242163 17242163 PRJNA682370_S_NODE_15614_length_181_cov_1.369863_g15002_i0 PRJNA682370 15614 181 1.369863 2.47945203 Leishmania infantum 5671 Euglenozoa other_Eukaryota 111 2.5e-20   NTclustered gi|339897917|ref|XM_003392361.1| 435258 g15002 i0 78.022 9.3646408839779 182 37 99 3 1 180 538 718 Leishmania infantum JPCM5 40S ribosomal protein S2 partial mRNA blastn 1695 111 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania infantum
21066629 21066629 PRJNA682370_S_NODE_12997_length_199_cov_1.615854_g12385_i0 PRJNA682370 12997 199 1.615854 3.21554946 Entosiphon sulcatum 101493 Euglenozoa other_Eukaryota 274 3.3899999999999997e-69   NTclustered gi|226347428|gb|FJ807254.1| 101493 g12385 i0 91.457 23.608040201005 199 17 100 0 1 199 581 383 Entosiphon sulcatum elongation factor 1 alpha gene, partial cds blastn 4698 274 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
24890424 24890424 PRJNA682370_S_NODE_18460_length_167_cov_1.954545_g17848_i0 PRJNA682370 18460 167 1.954545 3.26409015 Keelungia nitschei 2529305 Euglenozoa other_Eukaryota 132 1.7500000000000002e-26   NTclustered gi|1581142783|gb|MK567808.1| 2529305 g17848 i0 89.423 28.562874251497 104 11 62 0 1 104 1577 1474 Keelungia nitschei strain HFCC166 large subunit ribosomal RNA gene, partial sequence blastn 4770 132 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Heteronematidae Keelungia Keelungia nitschei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;