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contig_metadata

30 rows where analysis = "blastn", bioproject = "PRJNA682370" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682370 · 30 ✖

analysis 1

  • blastn · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
664387 664387 PRJNA682370_S_NODE_281_length_1565_cov_11.620915_g124_i0 PRJNA682370 281 1565 11.620915 181.86731975 Tinamus guttatus 94827 Chordata Chordata 2643 0   NTclustered gi|719769481|ref|XM_010220439.1| 94827 g124 i0 97.303 41.3233226837061 1557 42 99 0 9 1565 3327 1771 PREDICTED: Tinamus guttatus KRAB-A domain containing 2 (KRBA2), partial mRNA blastn 64671 2643 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
664460 664460 PRJNA682370_S_NODE_461_length_1208_cov_24.498721_g24_i10 PRJNA682370 461 1208 24.498721 295.94454968 Charadrius vociferus 50402 Chordata Chordata 2115 0   NTclustered gi|699657845|ref|XM_009883513.1| 50402 g24 i10 98.262 144.759105960265 1208 21 100 0 1 1208 3925 2718 PREDICTED: Charadrius vociferus uncharacterized LOC104285113 (LOC104285113), partial mRNA blastn 174869 2115 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
664512 664512 PRJNA682370_S_NODE_6021_length_319_cov_2.799296_g5409_i0 PRJNA682370 6021 319 2.799296 8.92975424 Mus musculus 10090 Chordata Chordata 63.9 1.38e-5   NTclustered gi|354786743|gb|JN951244.1| 10090 g5409 i0 100 0.921630094043887 34 0 11 0 286 319 22887 22920 Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Hao1:tm1a(EUCOMM)Wtsi; transgenic blastn 294 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
3726404 3726404 PRJNA682370_S_NODE_14383_length_189_cov_1.409091_g13771_i0 PRJNA682370 14383 189 1.409091 2.66318199 Rattus 10114 Chordata Chordata 86.1 1.6e-12   NTclustered gi|298891983|emb|FQ220829.1| 10116 g13771 i0 97.959 18.3862433862434 49 1 26 0 12 60 404 452 Rattus norvegicus TL0ADA41YI18 mRNA sequence blastn 3475 86.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
4492065 4492065 PRJNA682370_S_NODE_11364_length_215_cov_2.355556_g10752_i0 PRJNA682370 11364 215 2.355556 5.0644454 Canis lupus 9612 Chordata Chordata 62.1 3.15e-5   NTclustered gi|2272596144|ref|XM_025456198.3| 286419 g10752 i0 91.304 6.33953488372093 46 2 20 2 96 139 8 53 PREDICTED: Canis lupus dingo calcium voltage-gated channel subunit alpha1 D (CACNA1D), transcript variant X19, mRNA blastn 1363 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
4492094 4492094 PRJNA682370_S_NODE_12544_length_203_cov_1.821429_g11932_i0 PRJNA682370 12544 203 1.821429 3.69750087 Lampetra planeri 7750 Chordata Chordata 54.7 0.005   NTclustered gi|2805731030|emb|OZ078531.1| 7750 g11932 i0 96.97 0.300492610837438 33 0 16 1 41 73 186069 186038 Lampetra planeri genome assembly, chromosome: 46 blastn 61 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
5767884 5767884 PRJNA682370_S_NODE_17185_length_173_cov_1.246377_g16573_i0 PRJNA682370 17185 173 1.246377 2.15623221 Branchiostoma lanceolatum 7740 Chordata Chordata 52.8 0.015   NTclustered gi|2770723540|ref|XM_066442655.1| 7740 g16573 i0 100 0.323699421965318 28 0 16 0 99 126 1630 1657 PREDICTED: Branchiostoma lanceolatum uncharacterized protein (LOC136444896), transcript variant X3, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
5767926 5767926 PRJNA682370_S_NODE_19805_length_162_cov_6.496063_g19193_i0 PRJNA682370 19805 162 6.496063 10.52362206 Tinamus guttatus 94827 Chordata Chordata 250 4.45e-62   NTclustered gi|719749138|ref|XM_010214023.1| 94827 g19193 i0 94.444 2 162 9 100 0 1 162 717 556 PREDICTED: Tinamus guttatus uncharacterized LOC104567219 (LOC104567219), partial mRNA blastn 324 250 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
7042854 7042854 PRJNA682370_S_NODE_13286_length_197_cov_1.185185_g12674_i0 PRJNA682370 13286 197 1.185185 2.33481445 Elgaria multicarinata 71008 Chordata Chordata 158 3.5099999999999992e-34   NTclustered gi|2676946869|ref|XM_063128279.1| 159646 g12674 i0 84.375 6.14720812182741 160 25 81 0 1 160 1165 1324 PREDICTED: Elgaria multicarinata webbii ATP synthase F1 subunit alpha (ATP5F1A), mRNA blastn 1211 158 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Anguidae Elgaria Elgaria multicarinata
9593183 9593183 PRJNA682370_S_NODE_808_length_940_cov_38.653039_g37_i5 PRJNA682370 808 940 38.653039 363.3385666 Charadrius vociferus 50402 Chordata Chordata 1644 0   NTclustered gi|699656164|ref|XM_009883139.1| 50402 g37 i5 98.704 32.0617021276596 926 12 99 0 1 926 1181 2106 PREDICTED: Charadrius vociferus uncharacterized LOC104284769 (LOC104284769), mRNA blastn 30138 1644 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
10103241 10103241 PRJNA682370_S_NODE_12548_length_203_cov_1.773810_g11936_i0 PRJNA682370 12548 203 1.77381 3.6008343 Metazoa 33208 Chordata Chordata 52.8 0.018   NTclustered gi|2814964231|emb|OZ078336.2| 7750 g11936 i0 100 0.413793103448276 28 0 14 0 3 30 10534613 10534586 Lampetra planeri genome assembly, chromosome: 13 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
10868462 10868462 PRJNA682370_S_NODE_489_length_1175_cov_25.075439_g24_i11 PRJNA682370 489 1175 25.075439 294.63640825 Charadrius vociferus 50402 Chordata Chordata 2032 0   NTclustered gi|699657845|ref|XM_009883513.1| 50402 g24 i11 97.872 116.742127659574 1175 25 100 0 1 1175 3715 2541 PREDICTED: Charadrius vociferus uncharacterized LOC104285113 (LOC104285113), partial mRNA blastn 137172 2032 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
10868567 10868567 PRJNA682370_S_NODE_809_length_940_cov_30.740331_g37_i6 PRJNA682370 809 940 30.740331 288.9591114 Charadrius vociferus 50402 Chordata Chordata 1567 0   NTclustered gi|699656164|ref|XM_009883139.1| 50402 g37 i6 97.192 32.0521276595745 926 26 99 0 1 926 1181 2106 PREDICTED: Charadrius vociferus uncharacterized LOC104284769 (LOC104284769), mRNA blastn 30129 1567 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
10868588 10868588 PRJNA682370_S_NODE_8909_length_249_cov_28.967290_g8297_i0 PRJNA682370 8909 249 28.96729 72.1285521 Charadrius vociferus 50402 Chordata Chordata 422 1.49e-113   NTclustered gi|699667904|ref|XM_009885697.1| 50402 g8297 i0 97.189 34.0240963855422 249 7 100 0 1 249 2574 2326 PREDICTED: Charadrius vociferus uncharacterized LOC104287046 (LOC104287046), partial mRNA blastn 8472 422 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
12143533 12143533 PRJNA682370_S_NODE_12830_length_200_cov_6.987879_g12218_i0 PRJNA682370 12830 200 6.987879 13.975758 Tinamus guttatus 94827 Chordata Chordata 292 9.4e-75   NTclustered gi|719749138|ref|XM_010214023.1| 94827 g12218 i0 93.401 8.915 197 13 99 0 4 200 353 157 PREDICTED: Tinamus guttatus uncharacterized LOC104567219 (LOC104567219), partial mRNA blastn 1783 292 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
12143605 12143605 PRJNA682370_S_NODE_16290_length_177_cov_2.140845_g15678_i0 PRJNA682370 16290 177 2.140845 3.78929565 Mus musculus 10090 Chordata Chordata 54.7 0.004   NTclustered gi|53984594|gb|AC102315.9| 10090 g15678 i0 96.875 0.180790960451977 32 1 18 0 102 133 95847 95878 Mus musculus chromosome 3, clone RP24-441C20, complete sequence blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
13418558 13418558 PRJNA682370_S_NODE_8651_length_254_cov_2.401826_g8039_i0 PRJNA682370 8651 254 2.401826 6.10063804 Sitta europaea 50251 Chordata Chordata 52.8 0.023   NTclustered gi|2917605139|emb|OZ228681.1| 50251 g8039 i0 100 0.220472440944882 28 0 11 0 226 253 2680722 2680695 Sitta europaea genome assembly, chromosome: 27 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sittidae Sitta Sitta europaea
14693346 14693346 PRJNA682370_S_NODE_2772_length_501_cov_2.472103_g2181_i0 PRJNA682370 2772 501 2.472103 12.38523603 Mus musculus 10090 Chordata Chordata 318 4.3699999999999996e-82   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g2181 i0 84.337 6.40918163672655 332 44 66 8 159 487 384 58 Mus musculus lncRNA390 lncRNA, complete sequence blastn 3211 318 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
14693410 14693410 PRJNA682370_S_NODE_452_length_1220_cov_23.538397_g24_i9 PRJNA682370 452 1220 23.538397 287.1684434 Charadrius vociferus 50402 Chordata Chordata 2054 0   NTclustered gi|699657845|ref|XM_009883513.1| 50402 g24 i9 97.049 126.746721311475 1220 36 100 0 1 1220 2496 3715 PREDICTED: Charadrius vociferus uncharacterized LOC104285113 (LOC104285113), partial mRNA blastn 154631 2054 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
15967095 15967095 PRJNA682370_S_NODE_24753_length_150_cov_0.930435_g24141_i0 PRJNA682370 24753 150 0.930435 1.3956525 Mus musculus 10090 Chordata Chordata 272 8.609999999999998e-69   NTclustered gi|8017610|emb|AJ403307.1| 10090 g24141 i0 99.333 256.926666666667 150 1 100 0 1 150 720 571 M.musculus DNA for desmin-binding fragment DesB10 blastn 38539 272 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
17242067 17242067 PRJNA682370_S_NODE_10654_length_223_cov_3.000000_g10042_i0 PRJNA682370 10654 223 3 6.69 Nanorana parkeri 125878 Chordata Chordata 54.7 0.006   NTclustered gi|1072272283|ref|XM_018566441.1| 125878 g10042 i0 100 12.5605381165919 29 0 13 0 77 105 1623 1651 PREDICTED: Nanorana parkeri SRSF protein kinase 2 (SRPK2), mRNA blastn 2801 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dicroglossidae Nanorana Nanorana parkeri
19026311 19026311 PRJNA682370_S_NODE_12415_length_204_cov_4.000000_g11803_i0 PRJNA682370 12415 204 4 8.16 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.005   NTclustered gi|242108985|emb|FN405647.1| 9796 g11803 i0 100 1.82352941176471 29 0 14 0 1 29 215 187 Equus caballus microsatellite DNA, locus ABGe3342 blastn 372 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
19791068 19791068 PRJNA682370_S_NODE_11016_length_219_cov_1.853261_g10404_i0 PRJNA682370 11016 219 1.853261 4.05864159 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.005   NTclustered gi|840009081|emb|LK064645.1| 202946 g10404 i0 100 0.132420091324201 29 0 13 0 17 45 3555103 3555075 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold47 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
19791274 19791274 PRJNA682370_S_NODE_2176_length_573_cov_11.091078_g1622_i0 PRJNA682370 2176 573 11.091078 63.55187694 Tinamus guttatus 94827 Chordata Chordata 972 0   NTclustered gi|719769481|ref|XM_010220439.1| 94827 g1622 i0 97.368 32.3019197207679 570 15 99 0 1 570 1405 1974 PREDICTED: Tinamus guttatus KRAB-A domain containing 2 (KRBA2), partial mRNA blastn 18509 972 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
21066608 21066608 PRJNA682370_S_NODE_1217_length_762_cov_1.949106_g791_i0 PRJNA682370 1217 762 1.949106 14.85218772 Candoia aspera 51853 Chordata Chordata 58.4 0.002   NTclustered gi|2679143707|ref|XM_063316710.1| 51853 g791 i0 100 0.0406824146981627 31 0 4 0 471 501 643 673 PREDICTED: Candoia aspera CDC42 binding protein kinase gamma (CDC42BPG), mRNA blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Boidae Candoia Candoia aspera
22341746 22341746 PRJNA682370_S_NODE_4458_length_381_cov_2.263006_g3847_i0 PRJNA682370 4458 381 2.263006 8.62205286 Lampetra planeri 7750 Chordata Chordata 52.8 0.036   NTclustered gi|2805750629|emb|OZ078563.1| 7750 g3847 i0 100 0.073490813648294 28 0 7 0 231 258 2800240 2800267 Lampetra planeri genome assembly, chromosome: 78 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
23617301 23617301 PRJNA682370_S_NODE_359_length_1393_cov_10.648012_g124_i1 PRJNA682370 359 1393 10.648012 148.32680716 Tinamus guttatus 94827 Chordata Chordata 2364 0   NTclustered gi|719769481|ref|XM_010220439.1| 94827 g124 i1 97.473 66.781048097631 1385 35 99 0 1 1385 1943 3327 PREDICTED: Tinamus guttatus KRAB-A domain containing 2 (KRBA2), partial mRNA blastn 93026 2364 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
24890467 24890467 PRJNA682370_S_NODE_20800_length_159_cov_1.959677_g20188_i0 PRJNA682370 20800 159 1.959677 3.11588643 Canis lupus 9612 Chordata Chordata 274 2.58e-69   NTclustered gi|48526373|gb|AY633660.1| 9615 g20188 i0 97.484 35.7672955974843 159 4 100 0 1 159 215 57 Canis familiaris clone 30 Bsp repeat region blastn 5687 274 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
24890613 24890613 PRJNA682370_S_NODE_4840_length_363_cov_40.179878_g4228_i0 PRJNA682370 4840 363 40.179878 145.85295714 Charadrius vociferus 50402 Chordata Chordata 544 4.66e-150   NTclustered gi|699667904|ref|XM_009885697.1| 50402 g4228 i0 93.889 36.1074380165289 360 22 99 0 3 362 405 46 PREDICTED: Charadrius vociferus uncharacterized LOC104287046 (LOC104287046), partial mRNA blastn 13107 544 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
25401050 25401050 PRJNA682370_S_NODE_10680_length_223_cov_1.707447_g10068_i0 PRJNA682370 10680 223 1.707447 3.80760681 Metazoa 33208 Chordata Chordata 52.8 0.02   NTclustered gi|1387533815|ref|XM_006920469.3| 9402 g10068 i0 100 1.21076233183856 28 0 13 0 139 166 2545 2572 PREDICTED: Pteropus alecto RTF1 homolog, Paf1/RNA polymerase II complex component (RTF1), transcript variant X1, mRNA blastn 270 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;