RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682370" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA682370 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14693252 14693252 PRJNA682370_S_NODE_18792_length_166_cov_1.496183_g18180_i0 PRJNA682370 18792 166 1.496183 2.48366378 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 52.8 0.014   NTclustered gi|578016248|gb|CP002190.1| 765869 g18180 i0 100 0.168674698795181 28 0 17 0 27 54 2423663 2423636 Bdellovibrio bacteriovorus W, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
15203349 15203349 PRJNA682370_S_NODE_4032_length_404_cov_4.861789_g3421_i0 PRJNA682370 4032 404 4.861789 19.64162756 Bacteriovorax 146784 Bacteria Bacteria 398 4.319999999999999e-106   NTclustered gi|1700689994|gb|CP030035.1| 960 g3421 i0 84.559 184.027227722772 408 55 100 8 1 404 1660780 1660377 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 74347 398 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
19791364 19791364 PRJNA682370_S_NODE_3636_length_430_cov_2.118987_g3030_i0 PRJNA682370 3636 430 2.118987 9.1116441 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 575 1.9899999999999994e-159   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g3030 i0 90.805 175.779069767442 435 33 99 4 1 428 3446993 3447427 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 75585 575 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;