RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682370" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA682370 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
664178 664178 PRJNA682370_S_NODE_13481_length_195_cov_1.950000_g12869_i0 PRJNA682370 13481 195 1.95 3.8025 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 106 1.28e-18   NTclustered gi|83315550|ref|XM_725749.1| 5861 g12869 i0 81.061 3.15897435897436 132 25 68 0 21 152 774 905 Plasmodium yoelii adenosylhomocysteinase, putative (PY17X_1239000), partial mRNA blastn 616 106 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
15203322 15203322 PRJNA682370_S_NODE_21792_length_156_cov_13.016529_g21180_i0 PRJNA682370 21792 156 13.016529 20.30578524 Besnoitia 94642 SAR_Eukaryotes SAR_Eukaryotes 206 9.32e-49   NTclustered gi|1673126624|ref|XR_003828663.1| 94643 g21180 i0 90.385 102.833333333333 156 15 100 0 1 156 405 250 Besnoitia besnoiti 28S ribosomal RNA (BESB_086280), rRNA blastn 16042 206 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
17242108 17242108 PRJNA682370_S_NODE_12514_length_203_cov_3.208333_g11902_i0 PRJNA682370 12514 203 3.208333 6.51291599 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|1620114978|ref|XM_028670696.1| 5849 g11902 i0 100 0.694581280788177 30 0 15 0 6 35 1349 1378 Plasmodium gallinaceum serine/threonine protein kinase, putative (PGAL8A_00200500), partial mRNA blastn 141 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;