RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682370" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA682370 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13418308 13418308 PRJNA682370_S_NODE_21311_length_158_cov_1.195122_g20699_i0 PRJNA682370 21311 158 1.195122 1.88829276 Thecamonas trahens 529818 Root_unresolved Root_unresolved 134 4.53e-27   NTclustered gi|923120664|ref|XM_013898350.1| 461836 g20699 i0 82.051 9.67721518987342 156 28 99 0 1 156 1086 1241 Thecamonas trahens ATCC 50062 ATP-dependent RNA helicase eIF4A (AMSG_10343), partial mRNA blastn 1529 134 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
20301024 20301024 PRJNA682370_S_NODE_12616_length_202_cov_3.389222_g12004_i0 PRJNA682370 12616 202 3.389222 6.84622844 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 335 1.5599999999999993e-87   NTclustered gi|116222182|gb|DQ980467.1| 41120 g12004 i0 96.535 100.014851485149 202 7 100 0 1 202 2950 2749 Apusomonas proboscidea clone aplsu large subunit ribosomal RNA gene, partial sequence blastn 20203 335 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
24890439 24890439 PRJNA682370_S_NODE_19360_length_164_cov_1.403101_g18748_i0 PRJNA682370 19360 164 1.403101 2.30108564 Mylnikovia oxoniensis 1314681 Root_unresolved Root_unresolved 65.8 1.76e-6   NTclustered gi|2206682162|gb|OM966635.1| 1314681 g18748 i0 100 22.8475609756098 35 0 21 0 130 164 4266 4232 Mylnikovia oxoniensis strain CCAP19012 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3747 65.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Mylnikovia Mylnikovia oxoniensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;