contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA682078" and tax_phylum = "Thermodesulfobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1936711 | 1936711 | PRJNA682078_P_NODE_227842_length_250_cov_1.429379_g226065_i0 | PRJNA682078 | 227842 | 250 | 1.429379 | 3.5734475 | Geoalkalibacter subterraneus | 483547 | Bacteria | Bacteria | 213 | 9.81e-51 | NTclustered | gi|749207097|gb|CP010311.1| | 483547 | g226065 | i0 | 82.283 | 82.552 | 254 | 37 | 100 | 8 | 1 | 250 | 96021 | 95772 | Geoalkalibacter subterraneus strain Red1, complete genome | blastn | 20638 | 213 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Desulfuromonadales | Geoalkalibacteraceae | Geoalkalibacter | Geoalkalibacter subterraneus | ||
| 5762167 | 5762167 | PRJNA682078_P_NODE_141665_length_302_cov_1.930131_g139888_i0 | PRJNA682078 | 141665 | 302 | 1.930131 | 5.82899562 | Geobacter pickeringii | 345632 | Bacteria | Bacteria | 132 | 3.5100000000000004e-26 | NTclustered | gi|747129828|gb|CP009788.1| | 345632 | g139888 | i0 | 78.788 | 1.23509933774834 | 198 | 40 | 65 | 2 | 58 | 254 | 864837 | 865033 | Geobacter pickeringii strain G13, complete genome | blastn | 373 | 132 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Geobacterales | Geobacteraceae | Geobacter | Geobacter pickeringii | ||
| 13414692 | 13414692 | PRJNA682078_P_NODE_229771_length_250_cov_0.870056_g227994_i0 | PRJNA682078 | 229771 | 250 | 0.870056 | 2.17514 | Taurinivorans muris | 2787751 | Bacteria | Bacteria | 462 | 8.83e-126 | NTclustered | gi|2304091556|gb|CP065938.1| | 2787751 | g227994 | i0 | 100 | 1 | 250 | 0 | 100 | 0 | 1 | 250 | 1405648 | 1405399 | Taurinivorans muris strain LT0009 chromosome, complete genome | blastn | 250 | 462 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Taurinivorans | Taurinivorans muris | ||
| 15962104 | 15962104 | PRJNA682078_P_NODE_171133_length_280_cov_1.289855_g169356_i0 | PRJNA682078 | 171133 | 280 | 1.289855 | 3.611594 | Smithellaceae bacterium | 2964540 | Bacteria | Bacteria | 351 | 2.27e-92 | NTclustered | gi|2626214512|emb|OY820932.1| | 2964540 | g169356 | i0 | 89.855 | 0.985714285714286 | 276 | 24 | 98 | 4 | 3 | 276 | 4423132 | 4423405 | MAG: Smithellaceae bacterium isolate 90efb5c7-b315-4df1-98b9-9b59cc098579 genome assembly, chromosome: 1 | blastn | 276 | 351 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Syntrophia | Syntrophales | Smithellaceae | Smithellaceae bacterium | |||
| 15962502 | 15962502 | PRJNA682078_P_NODE_187973_length_270_cov_1.365482_g186196_i0 | PRJNA682078 | 187973 | 270 | 1.365482 | 3.6868014 | Thermodesulfobacteriota bacterium | 2202153 | Bacteria | Bacteria | 213 | 1.07e-50 | NTclustered | gi|2891482193|emb|OZ219926.1| | 2202153 | g186196 | i0 | 82.171 | 93.5740740740741 | 258 | 36 | 95 | 8 | 1 | 257 | 776370 | 776122 | MAG: Thermodesulfobacteriota bacterium isolate 21442c6b-cc68-4f82-8039-a5361455a999 genome assembly, chromosome: 3 | blastn | 25265 | 213 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteriota bacterium | ||||||
| 15965234 | 15965234 | PRJNA682078_P_NODE_297913_length_227_cov_2.376623_g296136_i0 | PRJNA682078 | 297913 | 227 | 2.376623 | 5.39493421 | uncultured Desulfuromonas sp. | 181013 | Bacteria | Bacteria | 193 | 1.14e-44 | NTclustered | gi|2621704006|emb|OY762961.1| | 181013 | g296136 | i0 | 83.333 | 0.92511013215859 | 210 | 33 | 92 | 2 | 19 | 227 | 802610 | 802402 | MAG: uncultured Desulfuromonas sp. isolate cad01da2-5f99-43ef-8b90-e7e0a75d6a39 genome assembly, chromosome: 1 | blastn | 210 | 193 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Desulfuromonadales | Desulfuromonadaceae | Desulfuromonas | uncultured Desulfuromonas sp. | ||
| 18514547 | 18514547 | PRJNA682078_P_NODE_298515_length_226_cov_2.013072_g296738_i0 | PRJNA682078 | 298515 | 226 | 2.013072 | 4.54954272 | Desulfovibrio desulfuricans | 876 | Bacteria | Bacteria | 346 | 8.24e-91 | NTclustered | gi|2172810686|gb|CP077745.1| | 876 | g296738 | i0 | 98.469 | 4.75221238938053 | 196 | 3 | 87 | 0 | 31 | 226 | 152387 | 152582 | Desulfovibrio desulfuricans strain Edelweiss chromosome, complete genome | blastn | 1074 | 346 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | Desulfovibrio desulfuricans | ||
| 21064555 | 21064555 | PRJNA682078_P_NODE_280917_length_242_cov_1.366864_g279140_i0 | PRJNA682078 | 280917 | 242 | 1.366864 | 3.30781088 | Taurinivorans muris | 2787751 | Bacteria | Bacteria | 436 | 5.1499999999999985e-118 | NTclustered | gi|2304091556|gb|CP065938.1| | 2787751 | g279140 | i0 | 99.174 | 1 | 242 | 2 | 100 | 0 | 1 | 242 | 1605349 | 1605108 | Taurinivorans muris strain LT0009 chromosome, complete genome | blastn | 242 | 436 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Taurinivorans | Taurinivorans muris | ||
| 24124885 | 24124885 | PRJNA682078_P_NODE_226759_length_250_cov_2.819209_g224982_i0 | PRJNA682078 | 226759 | 250 | 2.819209 | 7.0480225 | Desulfovibrio | 872 | Bacteria | Bacteria | 407 | 4.1899999999999994e-109 | NTclustered | gi|470484020|ref|NR_076625.1| | 876 | g224982 | i0 | 96 | 211.54 | 250 | 10 | 100 | 0 | 1 | 250 | 248 | 497 | Desulfovibrio desulfuricans subsp. desulfuricans strain ATCC 27774 23S ribosomal RNA gene, complete sequence | blastn | 52885 | 407 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | Desulfovibrio desulfuricans |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;