RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA682078" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682078 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
660812 660812 PRJNA682078_P_NODE_233281_length_249_cov_2.625000_g231504_i0 PRJNA682078 233281 249 2.625 6.53625 Philodina citrina 468664 Rotifera other_Eukaryota 375 1.18e-99   NTclustered gi|407227484|emb|FR856884.1| 468664 g231504 i0 93.952 5.50200803212851 248 15 99 0 1 248 2145 2392 Philodina citrina complete mitochondrial genome blastn 1370 375 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
5001603 5001603 PRJNA682078_P_NODE_24864_length_684_cov_6.101473_g23160_i0 PRJNA682078 24864 684 6.101473 41.73407532 Adineta 104781 Rotifera other_Eukaryota 1147 0   NTclustered gi|1005055512|gb|KU860655.1| 1813164 g23160 i0 96.93 62.4590643274854 684 21 100 0 1 684 1463 2146 Adineta vaga complex sp. A JFF-2016 isolate H001 28S ribosomal RNA gene, partial sequence blastn 42722 1158 0.990500863557858 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. A JFF-2016
8310798 8310798 PRJNA682078_P_NODE_103487_length_346_cov_3.417582_g101711_i0 PRJNA682078 103487 346 3.417582 11.82483372 Adineta vaga 104782 Rotifera other_Eukaryota 562 1.22e-155   NTclustered gi|259129963|gb|GQ398061.1| 104782 g101711 i0 95.954 76.8439306358381 346 14 100 0 1 346 6650 6995 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 26588 562 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
13417885 13417885 PRJNA682078_P_NODE_91971_length_364_cov_6.323024_g90195_i0 PRJNA682078 91971 364 6.323024 23.01580736 Adineta vaga 104782 Rotifera other_Eukaryota 580 3.56e-161   NTclustered gi|259129963|gb|GQ398061.1| 104782 g90195 i0 96.1 4.32967032967033 359 9 98 5 1 357 10043 10398 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 1576 580 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
15202787 15202787 PRJNA682078_P_NODE_68612_length_416_cov_3.793003_g66837_i0 PRJNA682078 68612 416 3.793003 15.77889248 Metazoa 33208 Rotifera other_Eukaryota 715 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g66837 i0 97.613 78.1971153846154 419 7 100 1 1 416 2721 3139 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 32530 715 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
23616182 23616182 PRJNA682078_P_NODE_65479_length_425_cov_4.420455_g63704_i0 PRJNA682078 65479 425 4.420455 18.78693375 Adineta vaga 104782 Rotifera other_Eukaryota 756 0   NTclustered gi|259129963|gb|GQ398061.1| 104782 g63704 i0 98.821 85.522352941176507 424 5 99 0 1 424 4178 4601 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 36347 756 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;