RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA682078" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682078 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5764777 5764777 PRJNA682078_P_NODE_246125_length_248_cov_0.874286_g244348_i0 PRJNA682078 246125 248 0.874286 2.16822928 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 250 7.41e-62   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g244348 i0 85.417 43.1209677419355 240 35 97 0 1 240 1961606 1961845 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 10694 250 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
12139578 12139578 PRJNA682078_P_NODE_206450_length_259_cov_1.634409_g204673_i0 PRJNA682078 206450 259 1.634409 4.23311931 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 278 3.58e-70   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g204673 i0 86.207 95.9227799227799 261 30 99 4 2 259 3252348 3252605 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 24844 278 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
21064187 21064187 PRJNA682078_P_NODE_265397_length_245_cov_0.895349_g263620_i0 PRJNA682078 265397 245 0.895349 2.19360505 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 239 1.5799999999999998e-58   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g263620 i0 85.778 2.40816326530612 225 32 92 0 21 245 433125 433349 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 590 239 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;