RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA682078" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682078 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4490402 4490402 PRJNA682078_P_NODE_298724_length_218_cov_4.248276_g296947_i0 PRJNA682078 298724 218 4.248276 9.26124168 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 276 1.05e-69   NTclustered gi|2874253755|emb|OY969695.1| 412054 g296947 i0 89.954 105.247706422018 219 15 99 6 1 215 343220 343005 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 22944 276 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5763996 5763996 PRJNA682078_P_NODE_215025_length_254_cov_2.127072_g213248_i0 PRJNA682078 215025 254 2.127072 5.40276288 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 296 9.65e-76   NTclustered gi|2107953857|gb|CP070792.1| 2026742 g213248 i0 88.048 123.287401574803 251 29 98 1 1 250 1095731 1095481 MAG: Gemmatimonadetes bacterium isolate bin1440 chromosome blastn 31315 296 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
8311810 8311810 PRJNA682078_P_NODE_145347_length_299_cov_1.022124_g143570_i0 PRJNA682078 145347 299 1.022124 3.05615076 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 411 3.979999999999999e-110   NTclustered gi|2874253978|emb|OY970303.1| 412054 g143570 i0 93.478 73.2073578595318 276 18 92 0 24 299 1903839 1903564 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 21889 411 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
12653221 12653221 PRJNA682078_P_NODE_47750_length_495_cov_3.943128_g45985_i0 PRJNA682078 47750 495 3.943128 19.5184836 Gemmatimonas 173479 Bacteria Bacteria 579 1.7899999999999993e-160   NTclustered gi|470475286|ref|NR_076270.1| 173480 g45985 i0 87.897 44.769696969697 504 45 100 15 1 495 24 520 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 22161 579 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
14688259 14688259 PRJNA682078_P_NODE_167932_length_282_cov_1.291866_g166155_i0 PRJNA682078 167932 282 1.291866 3.64306212 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 516 7.67e-142   NTclustered gi|226088597|dbj|AP009153.1| 379066 g166155 i0 99.645 1 282 1 100 0 1 282 2745747 2745466 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 282 516 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
17235614 17235614 PRJNA682078_P_NODE_102574_length_348_cov_1.120000_g100798_i0 PRJNA682078 102574 348 1.12 3.8976 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 411 4.719999999999999e-110   NTclustered gi|2874253978|emb|OY970303.1| 412054 g100798 i0 88.136 244.011494252874 354 31 100 10 1 348 3486204 3485856 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 84916 411 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18510138 18510138 PRJNA682078_P_NODE_120715_length_324_cov_2.338645_g118938_i0 PRJNA682078 120715 324 2.338645 7.5772098 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 453 7.140000000000001e-123   NTclustered gi|575456455|gb|CP007128.1| 861299 g118938 i0 92 53.6759259259259 325 23 100 3 1 324 3043117 3043439 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 17391 453 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
24885181 24885181 PRJNA682078_P_NODE_158460_length_288_cov_1.339535_g156683_i0 PRJNA682078 158460 288 1.339535 3.8578608 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 359 1.4e-94   NTclustered gi|2874253978|emb|OY970303.1| 412054 g156683 i0 89.31 297.086805555556 290 26 100 4 1 288 1902431 1902717 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 85561 359 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;