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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA681861" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA681861 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
657434 657434 PRJNA681861_P_NODE_43001_length_173_cov_1.527778_g40901_i0 PRJNA681861 43001 173 1.527778 2.64305594 uncultured archaeon 115547 Archaea Archaea 128 2.35e-25   NTclustered gi|765560199|gb|KP308700.1| 115547 g40901 i0 82.468 3.90173410404624 154 20 87 7 1 151 3166 3315 Uncultured archaeon clone RBG_16_scaffold_36611 genomic sequence blastn 675 128 1 Archaea               uncultured archaeon
4999813 4999813 PRJNA681861_P_NODE_42844_length_174_cov_1.351724_g40744_i0 PRJNA681861 42844 174 1.351724 2.35199976 Thermoproteati 1783275 Archaea Archaea 217 4.91e-52   NTclustered gi|22797874|emb|AJ496176.1| 29281 g40744 i0 89.205 38.2241379310345 176 15 100 4 1 174 7077 7250 Uncultured crenarchaeote 34 kb genomic fragment blastn 6651 217 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
21060090 21060090 PRJNA681861_P_NODE_18437_length_342_cov_2.006390_g16339_i0 PRJNA681861 18437 342 2.00639 6.8618538 uncultured crenarchaeote 29281 Archaea Archaea 464 3.5e-126   NTclustered gi|18996832|gb|AF473888.1| 29281 g16339 i0 99.222 95.6754385964912 257 2 96 0 86 342 239 495 Uncultured crenarchaeote t3_11C 16S ribosomal RNA gene, partial sequence blastn 32721 464 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
23610481 23610481 PRJNA681861_P_NODE_42339_length_176_cov_3.129252_g40239_i0 PRJNA681861 42339 176 3.129252 5.50748352 uncultured archaeon 115547 Archaea Archaea 326 7.92e-85   NTclustered gi|471295614|gb|KC817572.1| 115547 g40239 i0 100 100 176 0 100 0 1 176 459 284 Uncultured archaeon clone 10-33 16S ribosomal RNA gene, partial sequence blastn 17600 326 1 Archaea               uncultured archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;