RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA681822 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
655961 655961 PRJNA681822_P_NODE_46281_length_548_cov_1.941053_g44829_i0 PRJNA681822 46281 548 1.941053 10.63697044 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 686 0   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g44829 i0 89.397 284.459854014599 547 54 99 4 4 548 2612 2068 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 155884 686 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
4484213 4484213 PRJNA681822_P_NODE_476284_length_241_cov_1.833333_g474794_i0 PRJNA681822 476284 241 1.833333 4.41833253 Fontisphaera persica 2974023 Bacteria Bacteria 309 1.17e-79   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g474794 i0 90 85.5477178423236 240 23 99 1 1 239 3863038 3863277 Fontisphaera persica strain B-154 chromosome, complete genome blastn 20617 309 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
6274191 6274191 PRJNA681822_P_NODE_233105_length_290_cov_1.866359_g231616_i0 PRJNA681822 233105 290 1.866359 5.4124411 Verrucomicrobiota 74201 Bacteria Bacteria 56.5 0.002   NTclustered gi|2599616993|dbj|AP028972.1| 3081749 g231616 i0 100 0.206896551724138 30 0 10 0 89 118 5348315 5348344 Opitutales bacterium ASA1 DNA, complete genome blastn 60 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Alterococcaceae Congregicoccus Congregicoccus parvus
8823108 8823108 PRJNA681822_P_NODE_196807_length_310_cov_1.949367_g195319_i0 PRJNA681822 196807 310 1.949367 6.0430377 Verrucomicrobiota 74201 Bacteria Bacteria 80.5 1.33e-10   NTclustered gi|2874254065|emb|OY970130.1| 412056 g195319 i0 84.146 0.529032258064516 82 13 26 0 18 99 5154017 5153936 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 164 80.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
11373782 11373782 PRJNA681822_P_NODE_217289_length_298_cov_1.893333_g215801_i0 PRJNA681822 217289 298 1.893333 5.64213234 Luteolibacter 518753 Bacteria Bacteria 346 1.1299999999999999e-90   NTclustered gi|2585939279|dbj|AP024600.1| 2819286 g215801 i0 87.667 295.006711409396 300 34 100 3 1 298 2217430 2217132 Luteolibacter sp. LG18 DNA, complete genome blastn 87912 346 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
12133825 12133825 PRJNA681822_P_NODE_333210_length_265_cov_1.604167_g331721_i0 PRJNA681822 333210 265 1.604167 4.25104255 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 215 2.92e-51   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g331721 i0 82.061 484.811320754717 262 37 98 8 7 265 276707 276453 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 128475 215 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis
14684076 14684076 PRJNA681822_P_NODE_380452_length_251_cov_1.730337_g378963_i0 PRJNA681822 380452 251 1.730337 4.34314587 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 331 2.6100000000000006e-86   NTclustered gi|226525339|gb|FJ872375.1| 156588 g378963 i0 90.476 112.498007968127 252 22 100 2 1 251 28406 28156 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 28237 331 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
15954970 15954970 PRJNA681822_P_NODE_159813_length_334_cov_1.651341_g158325_i0 PRJNA681822 159813 334 1.651341 5.51547894 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 606 5.359999999999998e-169   NTclustered gi|226525339|gb|FJ872375.1| 156588 g158325 i0 99.401 260.943113772455 334 2 100 0 1 334 26377 26044 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 87155 606 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
15956578 15956578 PRJNA681822_P_NODE_278933_length_279_cov_1.975728_g277444_i0 PRJNA681822 278933 279 1.975728 5.51228112 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 339 1.7599999999999998e-88   NTclustered gi|164510704|emb|AJ966883.1| 48466 g277444 i0 91.463 238.05376344086 246 21 88 0 34 279 4859 4614 Prosthecobacter vanneervenii 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 12252 blastn 66417 339 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
19780371 19780371 PRJNA681822_P_NODE_252056_length_286_cov_1.338028_g250567_i0 PRJNA681822 252056 286 1.338028 3.82676008 Luteolibacter sp. LG18 2819286 Bacteria Bacteria 270 6.7e-68   NTclustered gi|2585939279|dbj|AP024600.1| 2819286 g250567 i0 85.714 2.60489510489511 259 33 91 3 2 260 3958994 3959248 Luteolibacter sp. LG18 DNA, complete genome blastn 745 270 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
21056992 21056992 PRJNA681822_P_NODE_330437_length_266_cov_1.378238_g328948_i0 PRJNA681822 330437 266 1.378238 3.66611308 Opitutus sp. GAS368 1882749 Bacteria Bacteria 228 3.7699999999999985e-55   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g328948 i0 85.333 58.3157894736842 225 27 83 6 1 222 2907717 2907496 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 15512 228 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
23609001 23609001 PRJNA681822_P_NODE_46319_length_548_cov_1.637895_g44867_i0 PRJNA681822 46319 548 1.637895 8.9756646 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 394 7.78e-105   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g44867 i0 80.15 2.52372262773723 534 100 97 6 17 547 4560339 4559809 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 1383 394 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;