RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_phylum = "Thermomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA681822 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4999414 4999414 PRJNA681822_P_NODE_474144_length_242_cov_0.911243_g472654_i0 PRJNA681822 474144 242 0.911243 2.20520806 Sphaerobacter 2056 Bacteria Bacteria 147 9.72e-31   NTclustered gi|470485500|ref|NR_076704.1| 2057 g472654 i0 89.655 123.549586776859 116 10 48 2 127 242 300 187 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 29899 147 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
7033370 7033370 PRJNA681822_P_NODE_361286_length_257_cov_1.673913_g359797_i0 PRJNA681822 361286 257 1.673913 4.30195641 Sphaerobacter thermophilus 2057 Bacteria Bacteria 246 9.99e-61   NTclustered gi|269785296|gb|CP001823.1| 479434 g359797 i0 83.984 36.9571984435798 256 41 99 0 1 256 2284914 2285169 Sphaerobacter thermophilus DSM 20745 chromosome 1, complete sequence blastn 9498 246 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
10099350 10099350 PRJNA681822_P_NODE_369328_length_255_cov_1.269231_g367839_i0 PRJNA681822 369328 255 1.269231 3.23653905 Sphaerobacter 2056 Bacteria Bacteria 104 6.31e-18   NTclustered gi|470485500|ref|NR_076704.1| 2057 g367839 i0 75.285 3.09411764705882 263 41 99 17 1 254 1696 1449 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 789 104 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
10857922 10857922 PRJNA681822_P_NODE_293389_length_276_cov_1.187192_g291900_i0 PRJNA681822 293389 276 1.187192 3.27664992 Thermomicrobium roseum 500 Bacteria Bacteria 204 6.62e-48   NTclustered gi|221155340|gb|CP001275.1| 309801 g291900 i0 80.072 1 276 53 99 2 1 275 958598 958324 Thermomicrobium roseum DSM 5159, complete genome blastn 276 204 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum
15957289 15957289 PRJNA681822_P_NODE_337893_length_264_cov_1.282723_g336404_i0 PRJNA681822 337893 264 1.282723 3.38638872 Sphaerobacter thermophilus 2057 Bacteria Bacteria 182 2.95e-41   NTclustered gi|269785296|gb|CP001823.1| 479434 g336404 i0 80 1.02272727272727 270 34 98 15 3 262 1108250 1107991 Sphaerobacter thermophilus DSM 20745 chromosome 1, complete sequence blastn 270 182 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
17231386 17231386 PRJNA681822_P_NODE_235354_length_290_cov_1.248848_g233865_i0 PRJNA681822 235354 290 1.248848 3.6216592 Thermomicrobium roseum 500 Bacteria Bacteria 348 3.06e-91   NTclustered gi|221155340|gb|CP001275.1| 309801 g233865 i0 88.276 1.20689655172414 290 34 100 0 1 290 1782228 1781939 Thermomicrobium roseum DSM 5159, complete genome blastn 350 348 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;