RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA681822 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
654502 654502 PRJNA681822_P_NODE_347541_length_261_cov_1.638298_g346052_i0 PRJNA681822 347541 261 1.638298 4.27595778 Fretibacterium fastidiosum 651822 Bacteria Bacteria 374 4.4699999999999985e-99   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g346052 i0 92.664 1.98467432950192 259 19 99 0 3 261 1859700 1859958 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 518 374 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
4483546 4483546 PRJNA681822_P_NODE_425604_length_247_cov_0.885057_g424115_i0 PRJNA681822 425604 247 0.885057 2.18609079 Fretibacterium fastidiosum 651822 Bacteria Bacteria 457 4.05e-124   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g424115 i0 100 2 247 0 100 0 1 247 553565 553811 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 494 457 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
14684293 14684293 PRJNA681822_P_NODE_397612_length_250_cov_0.870056_g396123_i0 PRJNA681822 397612 250 0.870056 2.17514 Fretibacterium fastidiosum 651822 Bacteria Bacteria 351 1.99e-92   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g396123 i0 98.02 1.808 202 4 81 0 1 202 596874 597075 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 452 351 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
18507347 18507347 PRJNA681822_P_NODE_395775_length_250_cov_0.870056_g394286_i0 PRJNA681822 395775 250 0.870056 2.17514 Fretibacterium fastidiosum 651822 Bacteria Bacteria 346 9.269999999999999e-91   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g394286 i0 93.534 1.856 232 15 93 0 19 250 841872 841641 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 464 346 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;