RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA681822 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4484123 4484123 PRJNA681822_P_NODE_468304_length_242_cov_1.426036_g466814_i0 PRJNA681822 468304 242 1.426036 3.45100712 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 309 1.17e-79   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g466814 i0 90 5.29752066115702 240 22 98 2 1 238 382318 382557 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 1282 309 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
12134351 12134351 PRJNA681822_P_NODE_377630_length_252_cov_1.720670_g376141_i0 PRJNA681822 377630 252 1.72067 4.3360884 Roseithermus sacchariphilus 2893045 Bacteria Bacteria 141 4.74e-29   NTclustered gi|1417721500|gb|CP030158.1| 2893045 g376141 i0 89.286 3.45238095238095 112 12 44 0 1 112 3781887 3781998 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome blastn 870 141 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Roseithermus Roseithermus sacchariphilus
12649984 12649984 PRJNA681822_P_NODE_361050_length_257_cov_1.673913_g359561_i0 PRJNA681822 361050 257 1.673913 4.30195641 Rhodothermus 29548 Bacteria Bacteria 198 2.8399999999999997e-46   NTclustered gi|1778174558|dbj|AP019796.1| 29549 g359561 i0 81.893 30.1322957198444 243 37 93 7 16 255 1314250 1314012 Rhodothermus marinus AA2-13 DNA, complete genome blastn 7744 198 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
15958431 15958431 PRJNA681822_P_NODE_432933_length_246_cov_0.890173_g431444_i0 PRJNA681822 432933 246 0.890173 2.18982558 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 195 3.49e-45   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g431444 i0 90 7.08130081300813 150 15 61 0 45 194 3765692 3765543 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 1742 195 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;