RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA681822 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3205194 3205194 PRJNA681822_P_NODE_322923_length_268_cov_1.456410_g321434_i0 PRJNA681822 322923 268 1.45641 3.9031788 Lacistorhynchus tenuis 56695 Platyhelminthes Platyhelminthes 135 2.3700000000000003e-27   NTclustered gi|1839203|gb|U85828.1|LTU85828 56695 g321434 i0 78.846 2.10820895522388 208 38 76 3 14 218 266 62 Lacistorhynchus tenuis enolase mRNA, partial cds blastn 565 135 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Trypanorhyncha Lacistorhynchidae Lacistorhynchus Lacistorhynchus tenuis
7034118 7034118 PRJNA681822_P_NODE_419626_length_247_cov_1.770115_g418137_i0 PRJNA681822 419626 247 1.770115 4.37218405 Stenostomum sthenum 1611831 Platyhelminthes Platyhelminthes 307 4.32e-79   NTclustered gi|1215837197|ref|NC_035256.1| 1611831 g418137 i0 89.113 1.00404858299595 248 25 100 2 1 247 8426 8180 Stenostomum sthenum mitochondrion, complete genome blastn 248 307 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sthenum
8308141 8308141 PRJNA681822_P_NODE_373147_length_253_cov_2.522222_g371658_i0 PRJNA681822 373147 253 2.522222 6.38122166 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.006   NTclustered gi|690520301|emb|LN071422.1| 99802 g371658 i0 100 0.114624505928854 29 0 11 0 182 210 4560 4532 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0068861 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
9582903 9582903 PRJNA681822_P_NODE_324428_length_267_cov_2.881443_g322939_i0 PRJNA681822 324428 267 2.881443 7.69345281 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 409 1.2599999999999998e-109   NTclustered gi|690749576|emb|LN305853.1| 99802 g322939 i0 94.526 1.02621722846442 274 0 97 4 9 267 1 274 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei, scaffold SPER_contig0088093 blastn 274 409 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
20296277 20296277 PRJNA681822_P_NODE_160476_length_334_cov_1.095785_g158988_i0 PRJNA681822 160476 334 1.095785 3.6599219 root 1 Root_unresolved Root_unresolved 52.8 0.031   NTclustered gi|55469740|gb|AY791899.1| 6206 g158988 i0 100 0.251497005988024 28 0 8 0 180 207 545 518 Taenia saginata 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Taenia Taenia saginata
21056395 21056395 PRJNA681822_P_NODE_280637_length_279_cov_1.417476_g279148_i0 PRJNA681822 280637 279 1.417476 3.95475804 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 505 1.6399999999999995e-138   NTclustered gi|28273263|gb|AY157151.1| 52061 g279148 i0 99.283 85.6523297491039 279 2 100 0 1 279 2131 1853 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 23897 505 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
24883114 24883114 PRJNA681822_P_NODE_69080_length_452_cov_3.519789_g67606_i0 PRJNA681822 69080 452 3.519789 15.90944628 Stenostomum sthenum 1611831 Platyhelminthes Platyhelminthes 791 0   NTclustered gi|1215837197|ref|NC_035256.1| 1611831 g67606 i0 98.23 45.6703539823009 452 8 100 0 1 452 8525 8976 Stenostomum sthenum mitochondrion, complete genome blastn 20643 791 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sthenum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;