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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA681822 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1170850 1170850 PRJNA681822_P_NODE_442521_length_245_cov_0.895349_g441032_i0 PRJNA681822 442521 245 0.895349 2.19360505 Naegleria 5761 Heterolobosea other_Eukaryota 119 2.15e-22   NTclustered gi|2031946985|emb|OD958550.1| 5763 g441032 i0 76.667 33.669387755102 240 40 98 11 1 240 3004 3227 Naegleria fowleri Karachi_NF001 strain blastn 8249 119 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
4999150 4999150 PRJNA681822_P_NODE_386964_length_251_cov_0.865169_g385475_i0 PRJNA681822 386964 251 0.865169 2.17157419 Naegleria 5761 Heterolobosea other_Eukaryota 464 2.47e-126   NTclustered gi|2651357780|gb|PP174296.1| 36333 g385475 i0 100 39.1235059760956 251 0 100 0 1 251 2128 2378 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9820 464 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
6274920 6274920 PRJNA681822_P_NODE_462205_length_243_cov_0.905882_g460715_i0 PRJNA681822 462205 243 0.905882 2.20129326 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 78.7 3.61e-10   NTclustered gi|290996517|ref|XM_002680783.1| 5762 g460715 i0 97.778 1.20987654320988 45 1 19 0 194 238 1569 1525 Naegleria gruberi myosin (NAEGRDRAFT_35518), partial mRNA blastn 294 78.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
7548204 7548204 PRJNA681822_P_NODE_24706_length_764_cov_1.052098_g23407_i0 PRJNA681822 24706 764 1.052098 8.03802872 Naegleria 5761 Heterolobosea other_Eukaryota 1356 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g23407 i0 98.691 24.6544502617801 764 10 100 0 1 764 3616 4379 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 18836 1356 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
8823219 8823219 PRJNA681822_P_NODE_228807_length_292_cov_1.584475_g227318_i0 PRJNA681822 228807 292 1.584475 4.626667 Naegleria 5761 Heterolobosea other_Eukaryota 540 4.74e-149   NTclustered gi|2651357798|gb|PP174311.1| 37103 g227318 i0 100 24.2705479452055 292 0 100 0 1 292 2988 2697 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7087 540 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
10857351 10857351 PRJNA681822_P_NODE_238609_length_289_cov_1.425926_g237120_i0 PRJNA681822 238609 289 1.425926 4.12092614 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 145 4.29e-30   NTclustered gi|290987211|ref|XM_002676271.1| 5762 g237120 i0 79.703 2.05190311418685 202 39 70 2 62 262 2 202 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_39465), mRNA blastn 593 145 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15199901 15199901 PRJNA681822_P_NODE_90392_length_406_cov_2.099099_g88910_i0 PRJNA681822 90392 406 2.099099 8.52234194 Naegleria 5761 Heterolobosea other_Eukaryota 726 0   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g88910 i0 98.768 97.5911330049261 406 5 100 0 1 406 1433 1838 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 39622 726 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
15199956 15199956 PRJNA681822_S_NODE_2052_length_152_cov_2.325203_g2027_i0 PRJNA681822 2052 152 2.325203 3.53430856 Naegleria 5761 Heterolobosea other_Eukaryota 217 4.16e-52   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g2027 i0 92.667 11.2105263157895 150 11 99 0 3 152 4104 4253 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 1704 217 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
16474006 16474006 PRJNA681822_P_NODE_74113_length_439_cov_1.530055_g72635_i0 PRJNA681822 74113 439 1.530055 6.71694145 Naegleria 5761 Heterolobosea other_Eukaryota 806 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g72635 i0 99.772 93.6378132118451 439 1 100 0 1 439 455 17 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 41107 811 0.99383477188656 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
18506699 18506699 PRJNA681822_P_NODE_340755_length_263_cov_1.542105_g339266_i0 PRJNA681822 340755 263 1.542105 4.05573615 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 448 2.6199999999999995e-121   NTclustered gi|290983829|ref|XM_002674585.1| 5762 g339266 i0 97.338 2.00760456273764 263 7 100 0 1 263 290 28 Naegleria gruberi ribosomal protein L34e (NAEGRDRAFT_58709), mRNA blastn 528 448 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
18507314 18507314 PRJNA681822_P_NODE_393775_length_250_cov_0.870056_g392286_i0 PRJNA681822 393775 250 0.870056 2.17514 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 244 3.48e-60   NTclustered gi|256665305|gb|AC237576.1| 5762 g392286 i0 84.4 28.924 250 37 99 2 1 249 2151 2399 Naegleria gruberi clone JGIBCCN-9M20, complete sequence blastn 7231 244 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19023126 19023126 PRJNA681822_S_NODE_1695_length_165_cov_2.044118_g1670_i0 PRJNA681822 1695 165 2.044118 3.3727947 Naegleria 5761 Heterolobosea other_Eukaryota 305 9.59e-79   NTclustered gi|399764194|gb|JQ271705.1| 36333 g1670 i0 100 99.8848484848485 165 0 100 0 1 165 2436 2272 Naegleria clarki strain TMR 18S ribosomal RNA gene, partial sequence blastn 16481 305 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
22329739 22329739 PRJNA681822_P_NODE_166498_length_329_cov_2.707031_g165010_i0 PRJNA681822 166498 329 2.707031 8.90613199 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 335 2.749999999999999e-87   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g165010 i0 85.196 3.86626139817629 331 44 100 2 1 329 2752 2425 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1272 335 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
22332605 22332605 PRJNA681822_P_NODE_393718_length_250_cov_0.870056_g392229_i0 PRJNA681822 393718 250 0.870056 2.17514 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 315 2.62e-81   NTclustered gi|290988973|ref|XM_002677099.1| 5762 g392229 i0 90.456 19.356 241 20 96 3 1 240 283 521 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55776), mRNA blastn 4839 315 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
23609671 23609671 PRJNA681822_P_NODE_60099_length_482_cov_1.491443_g58629_i0 PRJNA681822 60099 482 1.491443 7.18875526 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 885 0   NTclustered gi|399764212|gb|JQ271723.1| 74082 g58629 i0 99.793 56.0809128630705 482 1 100 0 1 482 1323 1804 Vahlkampfia avara strain 4171L 18S ribosomal RNA gene, partial sequence blastn 27031 885 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;