RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA681822 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1933544 1933544 PRJNA681822_S_NODE_1982_length_154_cov_1.496000_g1957_i0 PRJNA681822 1982 154 1.496 2.30384 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 257 2.5e-64   NTclustered gi|2874253789|emb|OY969773.1| 412054 g1957 i0 96.753 9.37662337662338 154 5 100 0 1 154 421884 421731 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 1444 257 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
3202683 3202683 PRJNA681822_P_NODE_136443_length_353_cov_0.960714_g134956_i0 PRJNA681822 136443 353 0.960714 3.39132042 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 440 6.099999999999998e-119   NTclustered gi|2874253728|emb|OY969570.1| 412054 g134956 i0 90.476 152.759206798867 336 29 100 3 1 335 172027 172360 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 53924 440 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18508292 18508292 PRJNA681822_P_NODE_473455_length_242_cov_0.911243_g471965_i0 PRJNA681822 473455 242 0.911243 2.20520806 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 337 5.37e-88   NTclustered gi|2874253978|emb|OY970303.1| 412054 g471965 i0 91.736 2.50413223140496 242 20 100 0 1 242 5298269 5298510 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 606 337 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22331901 22331901 PRJNA681822_P_NODE_337098_length_264_cov_1.565445_g335609_i0 PRJNA681822 337098 264 1.565445 4.1327748 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 344 3.55e-90   NTclustered gi|2874253978|emb|OY970303.1| 412054 g335609 i0 90.53 29.9507575757576 264 20 99 4 1 263 1903552 1903293 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 7907 344 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
24882485 24882485 PRJNA681822_P_NODE_479940_length_241_cov_0.916667_g478450_i0 PRJNA681822 479940 241 0.916667 2.20916747 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 257 4.28e-64   NTclustered gi|2874253978|emb|OY970303.1| 412054 g478450 i0 86.008 5.06639004149378 243 30 100 4 1 241 6523875 6523635 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 1221 257 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;