RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA681822 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4479763 4479763 PRJNA681822_P_NODE_134924_length_354_cov_1.281139_g133437_i0 PRJNA681822 134924 354 1.281139 4.53523206 Polychytrium aggregatum 110093 Fungi Fungi 250 1.11e-61   NTclustered gi|2432140698|ref|XM_053110328.1| 110093 g133437 i0 82.971 63.7994350282486 276 47 78 0 6 281 338 63 Polychytrium aggregatum 60S ribosomal protein L11 (BJ171DRAFT_498001), mRNA blastn 22585 250 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10859817 10859817 PRJNA681822_P_NODE_444289_length_245_cov_0.895349_g442800_i0 PRJNA681822 444289 245 0.895349 2.19360505 Lobulomycetales sp. 2058121 Fungi Fungi 104 6.02e-18   NTclustered gi|2468790865|gb|OQ702874.1| 2058121 g442800 i0 80.435 2.66530612244898 138 26 56 1 4 140 4173 4036 Lobulomycetales sp. isolate PSC090 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 653 104 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
12134311 12134311 PRJNA681822_P_NODE_373790_length_253_cov_1.711111_g372301_i0 PRJNA681822 373790 253 1.711111 4.32911083 Fimicolochytrium jonesii 1396493 Fungi Fungi 163 1.02e-35   NTclustered gi|2432094869|ref|XM_053071832.1| 1396493 g372301 i0 78.516 2.94861660079051 256 49 100 6 1 253 388 640 Fimicolochytrium jonesii ribosomal protein S2, flavodoxin-like domain-containing protein (EV422DRAFT_551381), partial mRNA blastn 746 163 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
13406486 13406486 PRJNA681822_P_NODE_175731_length_323_cov_1.728000_g174243_i0 PRJNA681822 175731 323 1.728 5.58144 Gromochytrium mamkaevae 1486924 Fungi Fungi 115 3.81e-21   NTclustered gi|612507318|gb|KF586842.1| 1486924 g174243 i0 91.566 17.4953560371517 83 7 26 0 241 323 6129 6211 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5651 115 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;