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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA681822" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 15 ✖

bioproject 1

  • PRJNA681822 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1930005 1930005 PRJNA681822_P_NODE_288802_length_277_cov_1.377451_g287313_i0 PRJNA681822 288802 277 1.377451 3.81553927 Coccomyxa subellipsoidea 248742 Plants Plants 322 1.76e-83   NTclustered gi|545363365|ref|XM_005646756.1| 574566 g287313 i0 88.148 10.1046931407942 270 32 97 0 3 272 299 30 Coccomyxa subellipsoidea C-169 ribosomal protein L3 component of cytosolic 80S ribosome and 60S large subunit mRNA blastn 2799 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
1930041 1930041 PRJNA681822_P_NODE_291822_length_276_cov_1.517241_g290333_i0 PRJNA681822 291822 276 1.517241 4.18758516 Auxenochlorella protothecoides 3075 Plants Plants 510 3.48e-140   NTclustered gi|760443516|ref|XM_011400525.1| 3075 g290333 i0 100 2.13768115942029 276 0 100 0 1 276 385 110 Auxenochlorella protothecoides 40S ribosomal protein S10 partial mRNA blastn 590 510 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
3205761 3205761 PRJNA681822_P_NODE_372163_length_254_cov_1.303867_g370674_i0 PRJNA681822 372163 254 1.303867 3.31182218 Auxenochlorella protothecoides 3075 Plants Plants 331 2.6500000000000002e-86   NTclustered gi|760439914|ref|XM_011398724.1| 3075 g370674 i0 100 0.704724409448819 179 0 70 0 76 254 2 180 Auxenochlorella protothecoides Signal recognition particle 19 kDa protein partial mRNA blastn 179 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
4481467 4481467 PRJNA681822_P_NODE_249664_length_286_cov_2.431925_g248175_i0 PRJNA681822 249664 286 2.431925 6.9553055 Coccomyxa subellipsoidea 248742 Plants Plants 291 5.15e-74   NTclustered gi|545366739|ref|XM_005648197.1| 574566 g248175 i0 85.121 2.59090909090909 289 37 100 5 1 286 830 1115 Coccomyxa subellipsoidea C-169 hypothetical protein partial mRNA blastn 741 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
4482523 4482523 PRJNA681822_P_NODE_343364_length_262_cov_1.645503_g341875_i0 PRJNA681822 343364 262 1.645503 4.31121786 Auxenochlorella protothecoides 3075 Plants Plants 479 9.249999999999999e-131   NTclustered gi|760446174|ref|XM_011401854.1| 3075 g341875 i0 99.618 71.0038167938931 262 1 100 0 1 262 267 528 Auxenochlorella protothecoides 40S ribosomal protein S2 partial mRNA blastn 18603 479 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
4999088 4999088 PRJNA681822_P_NODE_364524_length_256_cov_1.683060_g363035_i0 PRJNA681822 364524 256 1.68306 4.3086336 Pithophoraceae 926346 Plants Plants 473 4.189999999999999e-129   NTclustered gi|1050773031|gb|KU727243.1| 1883088 g363035 i0 100 100.015625 256 0 100 0 1 256 656 911 Aegagropilopsis sp. WD1401 18S ribosomal RNA gene, partial sequence blastn 25604 473 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Pithophoraceae Aegagropilopsis Aegagropilopsis sp. WD1401
6274527 6274527 PRJNA681822_P_NODE_334785_length_265_cov_1.203125_g333296_i0 PRJNA681822 334785 265 1.203125 3.18828125 Eukaryota 2759 Plants Plants 209 1.36e-49   NTclustered gi|2030184183|gb|MZ045839.1| 3077 g333296 i0 81.467 92.8377358490566 259 44 97 3 2 258 284 28 Chlorella vulgaris isolate GCH12 small subunit ribosomal RNA gene, partial sequence blastn 24602 209 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
8309650 8309650 PRJNA681822_P_NODE_49947_length_527_cov_2.792952_g48489_i0 PRJNA681822 49947 527 2.792952 14.71885704 Ulva prolifera 3117 Plants Plants 472 3.3499999999999996e-128   NTclustered gi|1915399073|gb|MN867373.1| 3117 g48489 i0 83.629 91.4629981024668 507 78 96 3 22 527 531 29 Ulva prolifera light-harvesting complex II protein (lhcbm-6) mRNA, partial cds blastn 48201 472 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
12131507 12131507 PRJNA681822_P_NODE_156050_length_337_cov_1.276515_g154562_i0 PRJNA681822 156050 337 1.276515 4.30185555 Auxenochlorella protothecoides 3075 Plants Plants 169 3.03e-37   NTclustered gi|760443892|ref|XM_011400713.1| 3075 g154562 i0 98.936 0.27893175074184 94 1 28 0 1 94 1113 1206 Auxenochlorella protothecoides DnaJ-like protein subfamily B member 14 partial mRNA blastn 94 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
18507320 18507320 PRJNA681822_P_NODE_394035_length_250_cov_0.870056_g392546_i0 PRJNA681822 394035 250 0.870056 2.17514 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.006   NTclustered gi|2082270078|ref|XM_043072241.1| 3055 g392546 i0 100 0.116 29 0 12 0 39 67 1641 1669 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_17g719900v5), mRNA blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
21058053 21058053 PRJNA681822_P_NODE_417357_length_248_cov_0.880000_g415868_i0 PRJNA681822 417357 248 0.88 2.1824 Coccomyxa subellipsoidea 248742 Plants Plants 272 1.5799999999999996e-68   NTclustered gi|545373953|ref|XM_005651234.1| 574566 g415868 i0 87.879 0.931451612903226 231 28 93 0 18 248 994 1224 Coccomyxa subellipsoidea C-169 TBCC-domain-containing protein partial mRNA blastn 231 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
22331253 22331253 PRJNA681822_P_NODE_280898_length_279_cov_1.354369_g279409_i0 PRJNA681822 280898 279 1.354369 3.77868951 Auxenochlorella protothecoides 3075 Plants Plants 516 7.58e-142   NTclustered gi|760440844|ref|XM_011399189.1| 3075 g279409 i0 100 1 279 0 100 0 1 279 292 14 Auxenochlorella protothecoides Ubiquitin-40S ribosomal protein S27a-1 partial mRNA blastn 279 516 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
23606991 23606991 PRJNA681822_P_NODE_303379_length_273_cov_1.540000_g301890_i0 PRJNA681822 303379 273 1.54 4.2042 Auxenochlorella protothecoides 3075 Plants Plants 449 7.61e-122   NTclustered gi|760440080|ref|XM_011398807.1| 3075 g301890 i0 100 1.66666666666667 243 0 89 0 31 273 991 1233 Auxenochlorella protothecoides ADP,ATP carrier protein partial mRNA blastn 455 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
24121902 24121902 PRJNA681822_P_NODE_160739_length_333_cov_3.669231_g159251_i0 PRJNA681822 160739 333 3.669231 12.21853923 Eukaryota 2759 Plants Plants 616 8.87e-172   NTclustered gi|1898545223|gb|MT951391.1| 3078 g159251 i0 100 99.96996996997 333 0 100 0 1 333 899 567 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 33290 616 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
24882423 24882423 PRJNA681822_P_NODE_475160_length_242_cov_0.863905_g473670_i0 PRJNA681822 475160 242 0.863905 2.0906501 Blidingia sp. DT1 2022611 Plants Plants 315 2.52e-81   NTclustered gi|1220117795|gb|KY401415.1| 2022611 g473670 i0 90.417 100.152892561983 240 22 99 1 3 242 1030 792 Blidingia sp. DT1 28S ribosomal RNA gene, partial sequence blastn 24237 315 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Blidingia Blidingia sp. DT1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;