RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA680334" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA680334 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3721141 3721141 PRJNA680334_S_NODE_82443_length_163_cov_4.753846_g81957_i0 PRJNA680334 82443 163 4.753846 7.74876898 Verrucomicrobium 2735 Bacteria Bacteria 200 4.589999999999999e-47   NTclustered gi|12583973|gb|AF245377.1| 240016 g81957 i0 89.441 168.39263803681 161 14 98 2 1 159 347 506 Verrucomicrobium spinosum 23S ribosomal RNA gene, partial sequence blastn 27448 200 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum
7027911 7027911 PRJNA680334_S_NODE_15246_length_276_cov_8.242798_g14760_i0 PRJNA680334 15246 276 8.242798 22.75012248 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 196 1.11e-45   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g14760 i0 80.135 1.07608695652174 297 31 99 18 1 273 1818519 1818811 Luteolibacter sp. SL250 chromosome blastn 297 196 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
8303756 8303756 PRJNA680334_S_NODE_84007_length_162_cov_4.775194_g83521_i0 PRJNA680334 84007 162 4.775194 7.73581428 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 220 3.49e-53   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g83521 i0 91.772 278.530864197531 158 13 98 0 5 162 2190 2347 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 45122 220 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
17227585 17227585 PRJNA680334_S_NODE_30554_length_223_cov_6.284211_g30068_i0 PRJNA680334 30554 223 6.284211 14.01379053 Luteolibacter sp. 1962973 Bacteria Bacteria 351 1.74e-92   NTclustered gi|2836248208|gb|CP121322.1| 1962973 g30068 i0 95.853 199.856502242152 217 9 97 0 7 223 1009882 1010098 MAG: Luteolibacter sp. isolate NCC532_bact_1514 chromosome, complete genome blastn 44568 351 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
18501351 18501351 PRJNA680334_S_NODE_10115_length_313_cov_7.096429_g9629_i0 PRJNA680334 10115 313 7.096429 22.21182277 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 217 9.81e-52   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g9629 i0 80 47.3546325878594 320 42 97 19 1 305 5627106 5627418 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 14822 217 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
19776154 19776154 PRJNA680334_S_NODE_16676_length_269_cov_3.169492_g16190_i0 PRJNA680334 16676 269 3.169492 8.52593348 Prosthecobacter dejongeii 48465 Bacteria Bacteria 268 2.2499999999999994e-67   NTclustered gi|183579826|emb|AM905423.1| 48465 g16190 i0 84.982 285.650557620818 273 32 100 7 1 269 1346 1079 Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 blastn 76840 268 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;