RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA680334" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA680334 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
650671 650671 PRJNA680334_S_NODE_9941_length_315_cov_3.184397_g9455_i0 PRJNA680334 9941 315 3.184397 10.03085055 uncultured Chloroflexota bacterium 166587 Bacteria Bacteria 182 3.6e-41   NTclustered gi|374855139|dbj|AP011791.1| 166587 g9455 i0 80.242 243.368253968254 248 43 77 6 70 313 7865 7620 Uncultured Chloroflexi bacterium DNA, fosmid clone: JFF053_H06 blastn 76661 182 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexota bacterium
5753167 5753167 PRJNA680334_S_NODE_31225_length_222_cov_2.989418_g30739_i0 PRJNA680334 31225 222 2.989418 6.63650796 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 67.6 7.03e-7   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g30739 i0 87.931 3 58 5 25 2 136 191 11123909 11123852 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 666 67.6 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
17228087 17228087 PRJNA680334_S_NODE_59094_length_182_cov_2.281879_g58608_i0 PRJNA680334 59094 182 2.281879 4.15301978 Aggregatilineales bacterium 2952883 Bacteria Bacteria 124 3.2299999999999997e-24   NTclustered gi|2621701642|emb|OY760398.1| 2952883 g58608 i0 82.166 126.148351648352 157 17 83 10 32 182 380998 381149 MAG: Aggregatilineales bacterium isolate 948f1344-b363-40c2-9c6d-9b25e8b84bf3 genome assembly, chromosome: 1 blastn 22959 124 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales     Aggregatilineales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;