RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA680334" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA680334 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1925455 1925455 PRJNA680334_S_NODE_19822_length_255_cov_3.094595_g19336_i0 PRJNA680334 19822 255 3.094595 7.89121725 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 207 4.67e-49   NTclustered gi|2800917394|gb|CP168972.1| 959 g19336 i0 83.117 19.8980392156863 231 35 90 3 27 255 3116668 3116440 Bdellovibrio bacteriovorus strain Bd19 chromosome, complete genome blastn 5074 207 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
4477214 4477214 PRJNA680334_S_NODE_14244_length_282_cov_4.200803_g13758_i0 PRJNA680334 14244 282 4.200803 11.84626446 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 302 2.34e-77   NTclustered gi|998647403|gb|KU691732.1| 239744 g13758 i0 86.989 100.950354609929 269 33 95 2 5 272 268 1 Uncultured Bdellovibrio sp. clone OTU_4077 16S ribosomal RNA gene, partial sequence blastn 28468 302 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
4477282 4477282 PRJNA680334_S_NODE_17744_length_264_cov_2.813853_g17258_i0 PRJNA680334 17744 264 2.813853 7.42857192 Bdellovibrio sp. NC01 2220073 Bacteria Bacteria 141 4.9999999999999993e-29   NTclustered gi|1700686220|gb|CP030034.1| 2220073 g17258 i0 92.784 1.06439393939394 97 7 37 0 1 97 3165403 3165499 Bdellovibrio sp. NC01 chromosome, complete genome blastn 281 141 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01
7028516 7028516 PRJNA680334_S_NODE_47926_length_194_cov_4.173913_g47440_i0 PRJNA680334 47926 194 4.173913 8.09739122 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 165 2.06e-36   NTclustered gi|2800914199|gb|CP168971.1| 959 g47440 i0 83.425 14.6701030927835 181 27 93 3 10 189 2919439 2919261 Bdellovibrio bacteriovorus strain Bd16 chromosome, complete genome blastn 2846 165 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
13923359 13923359 PRJNA680334_S_NODE_78431_length_166_cov_2.691729_g77945_i0 PRJNA680334 78431 166 2.691729 4.46827014 Bdellovibrio 958 Bacteria Bacteria 124 2.9e-24   NTclustered gi|2800948966|gb|CP168973.1| 959 g77945 i0 85.714 12.3855421686747 119 15 71 2 31 148 2128851 2128734 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 2056 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
21053163 21053163 PRJNA680334_S_NODE_93797_length_157_cov_1.443548_g93311_i0 PRJNA680334 93797 157 1.443548 2.26637036 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 87.9 3.55e-13   NTclustered gi|635300599|gb|CP007656.1| 959 g93311 i0 78.667 31.8343949044586 150 18 95 10 9 157 2247597 2247733 Bdellovibrio bacteriovorus strain 109J, complete genome blastn 4998 87.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
25395669 25395669 PRJNA680334_S_NODE_28620_length_228_cov_2.887179_g28134_i0 PRJNA680334 28620 228 2.887179 6.58276812 Bdellovibrio 958 Bacteria Bacteria 300 6.57e-77   NTclustered gi|1210342126|gb|CP020946.1| 959 g28134 i0 90.435 39.6184210526316 230 18 100 4 1 228 3307773 3307546 Bdellovibrio bacteriovorus strain SSB218315, complete genome blastn 9033 300 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;