RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA680334" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA680334 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
649184 649184 PRJNA680334_S_NODE_14381_length_281_cov_8.004032_g13895_i0 PRJNA680334 14381 281 8.004032 22.49132992 Acidobacteriaceae bacterium ZG23-2 2883246 Bacteria Bacteria 62.1 4.3e-5   NTclustered gi|2221425918|gb|CP085323.1| 2883246 g13895 i0 100 0.338078291814947 33 0 12 0 224 256 1345364 1345332 Acidobacteriaceae bacterium ZG23-2 chromosome, complete genome blastn 95 62.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium ZG23-2
12648730 12648730 PRJNA680334_S_NODE_85170_length_162_cov_1.302326_g84684_i0 PRJNA680334 85170 162 1.302326 2.10976812 Bacteria 2 Bacteria Bacteria 89.8 1.03e-13   NTclustered gi|2874254049|emb|OY970373.1| 171953 g84684 i0 89.855 0.87037037037037 69 7 43 0 10 78 331686 331754 MAG: uncultured Acidobacteriota bacterium isolate MFD09368.bin.c.1 genome assembly, chromosome: 1 blastn 141 89.8 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
24876221 24876221 PRJNA680334_S_NODE_6180_length_362_cov_239828.677812_g5695_i0 PRJNA680334 6180 362 239828.677812 868179.81367944 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 348 3.91e-91   NTclustered gi|217038907|gb|EU810998.1| 171953 g5695 i0 90.262 183.511049723757 267 24 73 2 94 359 319 54 Uncultured Acidobacteria bacterium clone 01QCK 23S ribosomal RNA gene, partial sequence blastn 66431 348 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;