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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA675638" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA675638 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1924623 1924623 PRJNA675638_P_NODE_15262_length_184_cov_1.007407_g15065_i0 PRJNA675638 15262 184 1.007407 1.85362888 Fringilla coelebs 37598 Chordata Chordata 54.7 0.004   NTclustered gi|2917613052|emb|OZ228692.1| 37598 g15065 i0 100 0.315217391304348 29 0 16 0 90 118 69805682 69805654 Fringilla coelebs genome assembly, chromosome: 5 blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
3199495 3199495 PRJNA675638_S_NODE_6803_length_175_cov_1.214286_g6741_i0 PRJNA675638 6803 175 1.214286 2.1250005 Crotalus tigris 88082 Chordata Chordata 52.8 0.015   NTclustered gi|1974302038|ref|XR_005554669.1| 88082 g6741 i0 100 0.16 28 0 16 0 1 28 6886 6859 PREDICTED: Crotalus tigris ligand dependent nuclear receptor corepressor like (LCORL), transcript variant X3, misc_RNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus tigris
3720649 3720649 PRJNA675638_P_NODE_15963_length_180_cov_0.908397_g15766_i0 PRJNA675638 15963 180 0.908397 1.6351146 Lampetra 13103 Chordata Chordata 54.7 0.004   NTclustered gi|2815006793|emb|OZ078596.2| 7748 g15766 i0 96.875 3.86111111111111 32 1 18 0 149 180 8892445 8892414 Lampetra fluviatilis genome assembly, chromosome: 28 blastn 695 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
4476572 4476572 PRJNA675638_S_NODE_9064_length_162_cov_0.902655_g9002_i0 PRJNA675638 9064 162 0.902655 1.4623011 Vulpes lagopus 494514 Chordata Chordata 250 4.45e-62   NTclustered gi|2044212914|ref|XR_005985650.1| 494514 g9002 i0 94.512 2.02469135802469 164 6 100 2 1 162 21507 21669 PREDICTED: Vulpes lagopus uncharacterized LOC121482884 (LOC121482884), transcript variant X1, ncRNA blastn 328 250 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Vulpes Vulpes lagopus
5752163 5752163 PRJNA675638_S_NODE_1825_length_324_cov_0.894545_g1763_i0 PRJNA675638 1825 324 0.894545 2.8983258 Saccopteryx leptura 249018 Chordata Chordata 54.7 0.008   NTclustered gi|2756211817|ref|XM_066357328.1| 249018 g1763 i0 100 0.0895061728395062 29 0 9 0 65 93 1200 1228 PREDICTED: Saccopteryx leptura uncharacterized protein (LOC136386014), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Emballonuridae Saccopteryx Saccopteryx leptura
5752170 5752170 PRJNA675638_S_NODE_5885_length_187_cov_0.847826_g5823_i0 PRJNA675638 5885 187 0.847826 1.58543462 Lampetra fluviatilis 7748 Chordata Chordata 63.9 7.39e-6   NTclustered gi|2805719359|emb|OZ078470.1| 7748 g5823 i0 100 149.181818181818 34 0 18 0 154 187 5226036 5226069 Lampetra fluviatilis genome assembly, chromosome: 67 blastn 27897 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
9577137 9577137 PRJNA675638_P_NODE_5948_length_280_cov_0.995671_g5751_i0 PRJNA675638 5948 280 0.995671 2.7878788 Saccopteryx leptura 249018 Chordata Chordata 54.7 0.007   NTclustered gi|2756211817|ref|XM_066357328.1| 249018 g5751 i0 100 0.103571428571429 29 0 10 0 2 30 1200 1228 PREDICTED: Saccopteryx leptura uncharacterized protein (LOC136386014), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Emballonuridae Saccopteryx Saccopteryx leptura
11372507 11372507 PRJNA675638_P_NODE_13609_length_194_cov_1.055172_g13412_i0 PRJNA675638 13609 194 1.055172 2.04703368 Chordata 7711 Chordata Chordata 54.7 0.005   NTclustered gi|56608624|gb|AY840232.1| 8384 g13412 i0 100 14.9484536082474 29 0 15 0 1 29 831 859 Bufo bufo isolate Sumela2 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 2900 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo bufo
13402615 13402615 PRJNA675638_P_NODE_5111_length_299_cov_2.864000_g4914_i0 PRJNA675638 5111 299 2.864 8.56336 Polypterus senegalus 55291 Chordata Chordata 335 2.47e-87   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g4914 i0 90.038 15.3110367892977 261 23 87 3 40 298 1173 1432 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 4578 335 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
14677642 14677642 PRJNA675638_S_NODE_5292_length_196_cov_1.149660_g5230_i0 PRJNA675638 5292 196 1.14966 2.2533336 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.005   NTclustered gi|840038716|emb|LK085257.1| 202946 g5230 i0 100 0.147959183673469 29 0 15 0 84 112 228 256 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold20688 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
15951238 15951238 PRJNA675638_P_NODE_17133_length_173_cov_0.790323_g16936_i0 PRJNA675638 17133 173 0.790323 1.36725879 Fringilla coelebs 37598 Chordata Chordata 52.8 0.015   NTclustered gi|2917623610|emb|OZ228715.1| 37598 g16936 i0 100 0.161849710982659 28 0 16 0 77 104 4379107 4379134 Fringilla coelebs genome assembly, chromosome: 28 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
17226567 17226567 PRJNA675638_P_NODE_14714_length_187_cov_1.456522_g14517_i0 PRJNA675638 14714 187 1.456522 2.72369614 Spinus spinus 160760 Chordata Chordata 97.1 7.29e-16   NTclustered gi|2917656247|emb|OZ228746.1| 160760 g14517 i0 85.567 2.20855614973262 97 9 49 5 41 132 2660462 2660558 Spinus spinus genome assembly, chromosome: 29 blastn 413 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
22325845 22325845 PRJNA675638_P_NODE_10878_length_214_cov_0.933333_g10681_i0 PRJNA675638 10878 214 0.933333 1.99733262 Spinus spinus 160760 Chordata Chordata 58.4 4.05e-4   NTclustered gi|2917633021|emb|OZ228725.1| 160760 g10681 i0 100 1.53738317757009 31 0 16 0 14 44 381663 381633 Spinus spinus genome assembly, chromosome: 8 blastn 329 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
23601349 23601349 PRJNA675638_P_NODE_15599_length_182_cov_1.233083_g15402_i0 PRJNA675638 15599 182 1.233083 2.24421106 Cairina moschata 8855 Chordata Chordata 52.8 0.015   NTclustered gi|2921976028|gb|CP130398.1| 8855 g15402 i0 100 0.153846153846154 28 0 15 0 152 179 9382051 9382078 Cairina moschata breed yongchun chromosome 20 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
23601385 23601385 PRJNA675638_P_NODE_4579_length_315_cov_1.078947_g4382_i0 PRJNA675638 4579 315 1.078947 3.39868305 Hyaena hyaena 95912 Chordata Chordata 52.8 0.029   NTclustered gi|1965455095|ref|XM_039231209.1| 95912 g4382 i0 100 0.0888888888888889 28 0 9 0 152 179 42 69 PREDICTED: Hyaena hyaena cullin 7 (CUL7), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Hyaena Hyaena hyaena
23601443 23601443 PRJNA675638_S_NODE_9359_length_161_cov_0.875000_g9297_i0 PRJNA675638 9359 161 0.875 1.40875 Sus scrofa 9823 Chordata Chordata 137 3.59e-28   NTclustered gi|224419421|emb|CU468098.7| 9823 g9297 i0 83.007 2.82608695652174 153 24 94 2 6 157 142851 142700 Pig DNA sequence from clone CH242-187J16 on chromosome X, complete sequence blastn 455 137 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;