RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA675638" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA675638 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4997328 4997328 PRJNA675638_P_NODE_8104_length_243_cov_1.041237_g7907_i0 PRJNA675638 8104 243 1.041237 2.53020591 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 449 6.65e-122   NTclustered gi|1964075631|dbj|LC602970.1| 5980 g7907 i0 100 99.9876543209877 243 0 100 0 1 243 262 504 Colpoda inflata Ishiguro7.29 gene for 18S rRNA, partial sequence blastn 24297 449 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata
5752183 5752183 PRJNA675638_S_NODE_8185_length_165_cov_0.879310_g8123_i0 PRJNA675638 8185 165 0.87931 1.4508615 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|1931716671|ref|XM_037634662.1| 54757 g8123 i0 100 0.16969696969697 28 0 17 0 44 71 8287 8260 Plasmodium vinckei vinckei conserved Plasmodium protein, unknown function (PVVCY_1202710), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;