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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA675331" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA675331 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3720209 3720209 PRJNA675331_P_NODE_16723_length_260_cov_1.010695_g16551_i0 PRJNA675331 16723 260 1.010695 2.627807 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 209 1.33e-49   NTclustered gi|675118790|gb|KJ877261.1| 1538727 g16551 i0 82.061 58.9807692307692 262 32 100 10 1 260 1244 996 Paroigolaimella stresemanni 28S ribosomal RNA gene, partial sequence blastn 15335 209 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Paroigolaimella Paroigolaimella stresemanni
11372085 11372085 PRJNA675331_P_NODE_3449_length_504_cov_1.250580_g3279_i0 PRJNA675331 3449 504 1.25058 6.3029232 Caenorhabditis 6237 Nematoda Nematoda 54.7 0.014   NTclustered gi|2158436942|ref|XM_002645332.2| 6238 g3279 i0 100 0.337301587301587 29 0 6 0 71 99 67 39 Caenorhabditis briggsae Protein CBR-UNC-27 (Cbr-unc-27), partial mRNA blastn 170 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11372091 11372091 PRJNA675331_P_NODE_6309_length_384_cov_0.990354_g6137_i0 PRJNA675331 6309 384 0.990354 3.80295936 Pristionchus 54125 Nematoda Nematoda 187 9.629999999999999e-43   NTclustered gi|150982135|gb|EF634656.1| 376547 g6137 i0 82.273 38.3880208333333 220 35 57 4 145 362 221 4 Pristionchus pseudaerivorus large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 14741 187 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pseudaerivorus
13401866 13401866 PRJNA675331_P_NODE_4231_length_460_cov_1.459948_g4059_i0 PRJNA675331 4231 460 1.459948 6.7157608 Caenorhabditis elegans 6239 Nematoda Nematoda 171 1.18e-37   NTclustered gi|156481|gb|M23433.1|CELUBIA 6239 g4059 i0 88.652 60.8065217391304 141 14 30 2 321 460 1602 1463 C.elegans polyubiquitin (UbiA) gene, complete cds blastn 27971 171 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17225860 17225860 PRJNA675331_P_NODE_9354_length_323_cov_1.616000_g9182_i0 PRJNA675331 9354 323 1.616 5.21968 Caenorhabditis elegans 6239 Nematoda Nematoda 75 6.47e-9   NTclustered gi|13489244|gb|AY008140.1| 6239 g9182 i0 92.308 0.804953560371517 52 4 16 0 271 322 1041 990 Caenorhabditis elegans isolate GOA-1 heterotrimeric G protein alpha subunit mRNA, complete cds blastn 260 75 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24873895 24873895 PRJNA675331_P_NODE_20060_length_248_cov_0.880000_g19888_i0 PRJNA675331 20060 248 0.88 2.1824 Brugia malayi 6279 Nematoda Nematoda 54.7 0.006   NTclustered gi|2082277598|ref|XM_001900924.2| 6279 g19888 i0 92.5 0.161290322580645 40 0 16 3 62 100 956 919 Brugia malayi uncharacterized protein (Bma-atf-7), partial mRNA blastn 40 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;