RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA675331" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA675331 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3198720 3198720 PRJNA675331_P_NODE_8943_length_329_cov_2.093750_g8771_i0 PRJNA675331 8943 329 2.09375 6.8884375 Paramoeba branchiphila 308475 Discosea other_Eukaryota 411 4.429999999999999e-110   NTclustered gi|226347442|gb|FJ807261.1| 308475 g8771 i0 89.091 100.392097264438 330 34 100 2 1 329 690 1018 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 33029 411 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
7026340 7026340 PRJNA675331_P_NODE_13126_length_282_cov_1.105263_g12954_i0 PRJNA675331 13126 282 1.105263 3.11684166 Paramoeba perurans 437603 Discosea other_Eukaryota 274 5.1e-69   NTclustered gi|2048770422|gb|MW534135.1| 437603 g12954 i0 84.982 2.41489361702128 273 37 96 4 7 277 332 602 Paramoeba perurans isolate PPER_00019895 multifunctional chaperone mRNA, complete cds blastn 681 274 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
8301035 8301035 PRJNA675331_P_NODE_10987_length_303_cov_1.608696_g10815_i0 PRJNA675331 10987 303 1.608696 4.87434888 Paramoeba branchiphila 308475 Discosea other_Eukaryota 307 5.46e-79   NTclustered gi|226347442|gb|FJ807261.1| 308475 g10815 i0 85.05 92.4455445544555 301 45 99 0 3 303 693 393 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 28011 307 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
18500077 18500077 PRJNA675331_P_NODE_8015_length_345_cov_1.830882_g7843_i0 PRJNA675331 8015 345 1.830882 6.3165429 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 316 1.05e-81   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g7843 i0 85.231 53.9130434782609 325 28 93 14 1 321 1788 1480 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 18600 316 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa
23600561 23600561 PRJNA675331_P_NODE_17739_length_252_cov_2.083799_g17567_i0 PRJNA675331 17739 252 2.083799 5.25117348 Vexillifera expectata 1789827 Discosea other_Eukaryota 405 1.52e-108   NTclustered gi|1042160925|dbj|LC102269.1| 1789827 g17567 i0 95.635 99.3809523809524 252 11 100 0 1 252 350 99 Vexillifera expectata gene for actin, partial cds, strain: 4730_cl4 blastn 25044 405 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera expectata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;