RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA675331" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA675331 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9576267 9576267 PRJNA675331_P_NODE_1028_length_880_cov_3.458488_g888_i0 PRJNA675331 1028 880 3.458488 30.4346944 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 758 0   NTclustered gi|297180392|gb|GU474842.1| 710820 g888 i0 83.314 382.285227272727 851 113 96 19 37 880 13192 14020 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 336411 758 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
22325101 22325101 PRJNA675331_P_NODE_1418_length_762_cov_3.381713_g1261_i0 PRJNA675331 1418 762 3.381713 25.76865306 uncultured delta proteobacterium HF0070_10I02 710824 Bacteria Bacteria 652 0   NTclustered gi|297181000|gb|GU474857.1| 710824 g1261 i0 82.452 155.456692913386 775 108 99 26 1 759 6199 6961 Uncultured delta proteobacterium HF0070_10I02 genomic sequence blastn 118458 652 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0070_10I02
24873922 24873922 PRJNA675331_P_NODE_4960_length_428_cov_2.166197_g4788_i0 PRJNA675331 4960 428 2.166197 9.27132316 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 442 2.0999999999999994e-119   NTclustered gi|297180392|gb|GU474842.1| 710820 g4788 i0 85.28 245.014018691589 428 63 100 0 1 428 12916 12489 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 104866 442 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;