RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA675042" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675042 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4473705 4473705 PRJNA675042_P_NODE_104584_length_252_cov_1.720670_g104134_i0 PRJNA675042 104584 252 1.72067 4.3360884 Deinococcus ficus 317577 Bacteria Bacteria 213 9.91e-51   NTclustered gi|1220362168|gb|CP021081.1| 317577 g104134 i0 86.139 205.888888888889 202 23 79 5 19 217 2342866 2342667 Deinococcus ficus strain CC-FR2-10, complete genome blastn 51884 213 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
8821124 8821124 PRJNA675042_P_NODE_23347_length_397_cov_2.907407_g22897_i0 PRJNA675042 23347 397 2.907407 11.54240579 Deinococcus 1298 Bacteria Bacteria 728 0   NTclustered gi|926663099|ref|NR_132693.1| 57497 g22897 i0 99.748 104.833753148615 397 1 100 0 1 397 70 466 Deinococcus radiopugnans strain DY59 16S ribosomal RNA, partial sequence blastn 41619 728 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans
10096942 10096942 PRJNA675042_P_NODE_54548_length_316_cov_2.481481_g54098_i0 PRJNA675042 54548 316 2.481481 7.84147996 Deinococcus 1298 Bacteria Bacteria 584 2.359999999999999e-162   NTclustered gi|1142915234|gb|KX832182.1| 47478 g54098 i0 100 106.03164556962 316 0 100 0 1 316 855 540 Deinococcus sp. strain 311:FR1_AP2_32 16S ribosomal RNA gene, partial sequence blastn 33506 584 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;