RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA675042" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA675042 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
647606 647606 PRJNA675042_P_NODE_99921_length_258_cov_1.010811_g99471_i0 PRJNA675042 99921 258 1.010811 2.60789238 Oedogonium capilliforme 2831087 Plants Plants 54.7 0.007   NTclustered gi|2031445063|gb|MW250874.1| 2831087 g99471 i0 100 0.112403100775194 29 0 11 0 156 184 22850 22822 Oedogonium capilliforme isolate 269-2_chl plastid, complete genome blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Oedogoniales Oedogoniaceae Oedogonium Oedogonium capilliforme
8821193 8821193 PRJNA675042_P_NODE_34767_length_358_cov_0.736842_g34317_i0 PRJNA675042 34767 358 0.736842 2.63789436 Eukaryota 2759 Plants Plants 56.5 0.003   NTclustered gi|2082270828|ref|XM_043072539.1| 3055 g34317 i0 96.97 5.22067039106145 33 1 9 0 1 33 3873 3841 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_17g735800v5), mRNA blastn 1869 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13400036 13400036 PRJNA675042_P_NODE_123671_length_249_cov_0.875000_g123221_i0 PRJNA675042 123671 249 0.875 2.17875 Lobochlamys culleus 51693 Plants Plants 52.8 0.023   NTclustered gi|952953841|gb|KT625158.1| 51693 g123221 i0 100 0.112449799196787 28 0 11 0 218 245 12153 12180 Lobochlamys culleus clone contig8 chloroplast, partial genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Lobochlamys Lobochlamys culleus
16470979 16470979 PRJNA675042_P_NODE_41033_length_342_cov_0.728625_g40583_i0 PRJNA675042 41033 342 0.728625 2.4918975 Eukaryota 2759 Plants Plants 52.8 0.032   NTclustered gi|359691140|dbj|AB571545.1| 103875 g40583 i0 100 0.16374269005848 28 0 8 0 315 342 154 127 Trebouxia corticola DNA, microsatellite: Tc16 blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia corticola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;