RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA674308" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674308 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4994859 4994859 PRJNA674308_P_NODE_29804_length_185_cov_1.147059_g29569_i0 PRJNA674308 29804 185 1.147059 2.12205915 Pseudomonadati 3379134 Bacteria Bacteria 224 3.16e-54   NTclustered gi|2893358420|emb|OZ220712.1| 2202153 g29569 i0 88.649 131.935135135135 185 20 99 1 2 185 1712793 1712609 MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 blastn 24408 224 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
8297900 8297900 PRJNA674308_P_NODE_11447_length_282_cov_1.918455_g11212_i0 PRJNA674308 11447 282 1.918455 5.4100431 Desulfarculia bacterium 3065862 Bacteria Bacteria 291 5.06e-74   NTclustered gi|2621702698|emb|OY759590.1| 3065862 g11212 i0 86.517 149.219858156028 267 33 95 3 16 282 335716 335453 MAG: Desulfarculia bacterium isolate 49400898-fc5b-42b7-bef8-a303f8702bb8 genome assembly, chromosome: 1 blastn 42080 291 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia       Desulfarculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;