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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA674308" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA674308 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
644543 644543 PRJNA674308_P_NODE_18841_length_225_cov_2.340909_g18606_i0 PRJNA674308 18841 225 2.340909 5.26704525 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 193 1.13e-44   NTclustered gi|669138647|ref|XM_008606670.1| 1156394 g18606 i0 82.222 1.97777777777778 225 38 99 2 2 225 2084 1861 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 445 193 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
644591 644591 PRJNA674308_P_NODE_23701_length_204_cov_53.148387_g23466_i0 PRJNA674308 23701 204 53.148387 108.42270948 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 239 1.27e-58   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g23466 i0 87.864 38.3039215686275 206 21 100 4 1 204 1694 1491 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 7814 239 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
644629 644629 PRJNA674308_P_NODE_2741_length_588_cov_43.647495_g2514_i0 PRJNA674308 2741 588 43.647495 256.6472706 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.81e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g2514 i0 80.533 57.530612244898 375 65 63 4 29 396 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
1166510 1166510 PRJNA674308_P_NODE_20781_length_216_cov_2.179641_g20546_i0 PRJNA674308 20781 216 2.179641 4.70802456 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 206 1.3799999999999998e-48   NTclustered gi|2248512916|ref|NC_063792.1| 100870 g20546 i0 84.112 93.4027777777778 214 32 99 2 3 215 17970 18182 Phytophthora litchii isolate SHS3 mitochondrion, complete genome blastn 20175 207 0.995169082125604 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora litchii
1920784 1920784 PRJNA674308_P_NODE_2302_length_650_cov_1.777038_g2082_i0 PRJNA674308 2302 650 1.777038 11.550747 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 1038 0   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g2082 i0 96.232 101.758461538462 637 18 98 6 17 650 2849 2216 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 66143 1038 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
3718163 3718163 PRJNA674308_P_NODE_19003_length_225_cov_0.886364_g18768_i0 PRJNA674308 19003 225 0.886364 1.994319 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 213 8.670000000000002e-51   NTclustered gi|2795042802|ref|XM_067923953.1| 4785 g18768 i0 84.163 28.1111111111111 221 33 98 2 6 225 569 350 Phytophthora cinnamomi guanine nucleotide-binding protein subunit beta-like protein (IUM83_00199), partial mRNA blastn 6325 213 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9573491 9573491 PRJNA674308_P_NODE_7708_length_342_cov_6.566553_g7473_i0 PRJNA674308 7708 342 6.566553 22.45761126 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 294 4.87e-75   NTclustered gi|2289|emb|X59936.1| 4766 g7473 i0 87.451 72.6842105263158 255 32 75 0 88 342 1 255 A.bisexualis gene for actin blastn 24858 294 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
10848615 10848615 PRJNA674308_P_NODE_11709_length_279_cov_20.517391_g11474_i0 PRJNA674308 11709 279 20.517391 57.24352089 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 499 7.63e-137   NTclustered gi|698793876|ref|XR_717098.1| 112090 g11474 i0 98.925 84.7670250896057 279 3 100 0 1 279 2469 2191 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 23650 499 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
12124206 12124206 PRJNA674308_P_NODE_50150_length_163_cov_0.912281_g49915_i0 PRJNA674308 50150 163 0.912281 1.48701803 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 302 1.22e-77   NTclustered gi|166046571|emb|CU367688.1| 100861 g49915 i0 100 51.6257668711656 163 0 100 0 1 163 230 392 Aphanomyces euteiches cDNA blastn 8415 302 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
12645859 12645859 PRJNA674308_P_NODE_27510_length_191_cov_3.978873_g27275_i0 PRJNA674308 27510 191 3.978873 7.59964743 Saprolegniaceae 4764 SAR_Eukaryotes SAR_Eukaryotes 318 1.4699999999999996e-82   NTclustered gi|5327102|emb|AJ238661.1| 92984 g27275 i0 96.859 100.759162303665 191 5 100 1 1 191 670 859 Leptolegnia chapmanii 18S rRNA gene, partial blastn 19245 318 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Leptolegnia Leptolegnia chapmanii
13399001 13399001 PRJNA674308_P_NODE_54711_length_152_cov_8.368932_g54476_i0 PRJNA674308 54711 152 8.368932 12.72077664 Aphanomyces brasiliensis 2525538 SAR_Eukaryotes SAR_Eukaryotes 281 1.46e-71   NTclustered gi|2098511708|gb|OK235679.1| 2525538 g54476 i0 100 101.953947368421 152 0 100 0 1 152 98 249 Aphanomyces brasiliensis voucher CCIBt4545 small subunit ribosomal RNA gene, partial sequence blastn 15497 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces brasiliensis
15947600 15947600 PRJNA674308_P_NODE_5413_length_408_cov_2.247911_g5178_i0 PRJNA674308 5413 408 2.247911 9.17147688 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 640 6.569999999999999e-179   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g5178 i0 95.739 106.007352941176 399 13 97 4 12 408 8991 8595 Achlya hypogyna mitochondrion, complete genome blastn 43251 640 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
15947631 15947631 PRJNA674308_P_NODE_9693_length_305_cov_5.488281_g9458_i0 PRJNA674308 9693 305 5.488281 16.73925705 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 564 2.95e-156   NTclustered gi|1578815424|gb|MK546601.1| 1982524 g9458 i0 100 99.7803278688525 305 0 100 0 1 305 573 269 Aphanomyces sp. voucher CCIBt4545 large subunit ribosomal RNA gene, partial sequence blastn 30433 564 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
17222779 17222779 PRJNA674308_P_NODE_26274_length_195_cov_4.986301_g26039_i0 PRJNA674308 26274 195 4.986301 9.72328695 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 126 9.79e-25   NTclustered gi|698785786|ref|XM_009827635.1| 112090 g26039 i0 84.375 62.4974358974359 128 20 66 0 1 128 205 332 Aphanomyces astaci histone H4 mRNA blastn 12187 126 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
21047122 21047122 PRJNA674308_P_NODE_16137_length_241_cov_1.916667_g15902_i0 PRJNA674308 16137 241 1.916667 4.61916747 Phytopythium fagopyri 1130067 SAR_Eukaryotes SAR_Eukaryotes 156 1.6100000000000002e-33   NTclustered gi|440647382|dbj|AB690639.1| 1130067 g15902 i0 83.333 70.1369294605809 168 28 70 0 8 175 289 122 Phytopythium fagopyri mitochondrial COXI gene for cytochrome oxidase I, partial cds, isolate: HonMa blastn 16903 156 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium fagopyri
22322162 22322162 PRJNA674308_P_NODE_45638_length_165_cov_0.896552_g45403_i0 PRJNA674308 45638 165 0.896552 1.4793108 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 121 3.73e-23   NTclustered gi|669152195|ref|XM_008613438.1| 1156394 g45403 i0 80.645 26.2606060606061 155 30 94 0 10 164 306 152 Saprolegnia diclina VS20 40S ribosomal protein S2 mRNA blastn 4333 121 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
24118460 24118460 PRJNA674308_P_NODE_25419_length_198_cov_74.825503_g25184_i0 PRJNA674308 25419 198 74.825503 148.15449594 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 274 3.37e-69   NTclustered gi|145280621|gb|EF175576.1| 434927 g25184 i0 100 75.2323232323232 148 0 75 0 51 198 300 153 Aphanomyces sp. MCA 3058 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 14896 274 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp. MCA 3058
24870890 24870890 PRJNA674308_P_NODE_28280_length_189_cov_1.685714_g28045_i0 PRJNA674308 28280 189 1.685714 3.18599946 Phytophthora novae-guineae 3070859 SAR_Eukaryotes SAR_Eukaryotes 217 5.429999999999999e-52   NTclustered gi|1940379313|gb|MN883605.1| 3070859 g28045 i0 87.302 97.7513227513227 189 24 100 0 1 189 17334 17522 Phytophthora novae-guineae culture ICMP:19637 mitochondrion, complete genome blastn 18475 217 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora novae-guineae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;