RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA674308" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA674308 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
644512 644512 PRJNA674308_P_NODE_14881_length_250_cov_2.069652_g14646_i0 PRJNA674308 14881 250 2.069652 5.17413 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 368 1.98e-97   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g14646 i0 93.227 151.808 251 15 100 2 1 250 4443 4692 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 37952 368 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
10095316 10095316 PRJNA674308_P_NODE_44468_length_165_cov_4.482759_g44233_i0 PRJNA674308 44468 165 4.482759 7.39655235 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 243 7.63e-60   NTclustered gi|440222388|gb|JX030056.1| 5659 g44233 i0 93.293 82.5575757575758 164 11 99 0 2 165 182 19 Leishmania amazonensis isolate LaPH8.rRNA.32 28S ribosomal RNA (LSU-delta M2), partial sequence blastn 13622 243 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
16469371 16469371 PRJNA674308_P_NODE_23973_length_203_cov_80.623377_g23738_i0 PRJNA674308 23973 203 80.623377 163.66545531 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 268 1.6099999999999998e-67   NTclustered gi|2414483|emb|Y00055.1| 5656 g23738 i0 91.371 117.990147783251 197 16 97 1 1 197 7030 6835 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 23952 270 0.992592592592593 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
24118491 24118491 PRJNA674308_P_NODE_28579_length_188_cov_2.244604_g28344_i0 PRJNA674308 28579 188 2.244604 4.21985552 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.001   NTclustered gi|1109595329|gb|KY085922.1| 5693 g28344 i0 100 4.44148936170213 30 0 16 0 139 168 867 896 Trypanosoma cruzi clone 3G9 hypothetical protein mRNA, partial cds blastn 835 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;