RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA674308" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA674308 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9573210 9573210 PRJNA674308_P_NODE_2468_length_624_cov_18.902609_g2245_i0 PRJNA674308 2468 624 18.902609000000002 117.95228016 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 944 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g2245 i0 96.213 59.2596153846154 581 15 92 7 49 624 4 582 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 36978 944 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
10848859 10848859 PRJNA674308_P_NODE_39669_length_168_cov_0.873950_g39434_i0 PRJNA674308 39669 168 0.87395 1.468236 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 243 7.8e-60   NTclustered gi|470394462|ref|XM_004334945.1| 1257118 g39434 i0 98.54 4.07738095238095 137 2 82 0 1 137 137 1 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_096510), partial mRNA blastn 685 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13920451 13920451 PRJNA674308_P_NODE_2171_length_671_cov_91.607717_g1959_i0 PRJNA674308 2171 671 91.607717 614.68778107 Cochliopodium 313557 Discosea other_Eukaryota 913 0   NTclustered gi|59876024|gb|AY785057.1| 313998 g1959 i0 91.241 55.6304023845007 685 38 100 18 1 671 47 723 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 37328 913 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel
17222828 17222828 PRJNA674308_P_NODE_31614_length_180_cov_1.274809_g31379_i0 PRJNA674308 31614 180 1.274809 2.2946562 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 263 6.479999999999999e-66   NTclustered gi|300078498|gb|GU001160.1| 5755 g31379 i0 92.222 1.23333333333333 180 14 100 0 1 180 7831 7652 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 222 263 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18497329 18497329 PRJNA674308_P_NODE_8775_length_321_cov_15.360294_g8540_i0 PRJNA674308 8775 321 15.360294 49.30654374 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 459 1.5199999999999996e-124   NTclustered gi|659103927|gb|KJ569727.1| 1512276 g8540 i0 93.291 36.9781931464174 313 17 96 3 13 321 1760 1448 Cochliopodium kieliense clone 9611 18S ribosomal RNA gene, partial sequence blastn 11870 459 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
18497339 18497339 PRJNA674308_P_NODE_9795_length_304_cov_1.545098_g9560_i0 PRJNA674308 9795 304 1.545098 4.69709792 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 540 4.96e-149   NTclustered gi|659103845|gb|KJ569729.1| 1512276 g9560 i0 98.684 99.4243421052632 304 4 100 0 1 304 133 436 Cochliopodium kieliense isolate 2 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 30225 540 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
19771468 19771468 PRJNA674308_P_NODE_14856_length_250_cov_16.641791_g14621_i0 PRJNA674308 14856 250 16.641791 41.6044775 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 357 4.28e-94   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g14621 i0 92.248 54.076 258 11 100 7 1 250 2000 1744 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 13519 357 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
21047412 21047412 PRJNA674308_P_NODE_49457_length_163_cov_1.789474_g49222_i0 PRJNA674308 49457 163 1.789474 2.91684262 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 231 1.63e-56   NTclustered gi|300078498|gb|GU001160.1| 5755 g49222 i0 92.169 1.01840490797546 166 9 99 3 1 162 5920 5755 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 166 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;