RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA674308" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674308 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7023519 7023519 PRJNA674308_P_NODE_44166_length_166_cov_0.888889_g43931_i0 PRJNA674308 44166 166 0.888889 1.47555574 Eunicella cavolini 317547 Cnidaria other_Eukaryota 63.9 6.42e-6   NTclustered gi|2918369563|emb|OZ237729.1| 317547 g43931 i0 97.297 6.18072289156626 37 1 22 0 2 38 12151987 12152023 Eunicella cavolini genome assembly, chromosome: 13 blastn 1026 63.9 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Eunicellidae Eunicella Eunicella cavolini
16469308 16469308 PRJNA674308_P_NODE_14853_length_250_cov_50.651741_g14618_i0 PRJNA674308 14853 250 50.651741 126.6293525 Ellisella 328399 Cnidaria other_Eukaryota 97.1 1.03e-15   NTclustered gi|2689317297|gb|PP410744.1| 2751895 g14618 i0 95.161 22.66 62 2 25 1 169 230 3528 3588 Ellisella elongata voucher USNM:1660444 large subunit ribosomal RNA gene, partial sequence blastn 5665 97.1 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleralcyonacea Ellisellidae Ellisella Ellisella elongata
22321983 22321983 PRJNA674308_P_NODE_22818_length_208_cov_1.308176_g22583_i0 PRJNA674308 22818 208 1.308176 2.72100608 Eunicella cavolini 317547 Cnidaria other_Eukaryota 52.8 0.018   NTclustered gi|2918369551|emb|OZ237723.1| 317547 g22583 i0 100 0.134615384615385 28 0 13 0 119 146 15179012 15178985 Eunicella cavolini genome assembly, chromosome: 7 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Eunicellidae Eunicella Eunicella cavolini
22844065 22844065 PRJNA674308_P_NODE_34918_length_171_cov_1.704918_g34683_i0 PRJNA674308 34918 171 1.704918 2.91540978 Cnidaria 6073 Cnidaria other_Eukaryota 62.1 2.38e-5   NTclustered gi|2744830952|ref|XM_002165653.5| 6087 g34683 i0 92.857 0.976608187134503 42 3 25 0 51 92 433 392 PREDICTED: Hydra vulgaris protein DD3-3 (LOC100210880), transcript variant X1, mRNA blastn 167 62.1 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
23597456 23597456 PRJNA674308_P_NODE_18139_length_229_cov_1.666667_g17904_i0 PRJNA674308 18139 229 1.666667 3.81666743 Physonectae sp. 3052288 Cnidaria other_Eukaryota 206 1.48e-48   NTclustered gi|2523517676|gb|OQ957211.1| 3052288 g17904 i0 83.043 96.471615720524 230 36 99 1 1 227 962 1191 Physonectae sp. mitochondrion, complete genome blastn 22092 206 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Siphonophorae     Physonectae sp.
23597777 23597777 PRJNA674308_P_NODE_5459_length_406_cov_1.862745_g5224_i0 PRJNA674308 5459 406 1.862745 7.5627447 Hydra vulgaris 6087 Cnidaria other_Eukaryota 265 4.6e-66   NTclustered gi|2744868955|ref|XM_065801111.1| 6087 g5224 i0 79.275 40.4187192118227 386 74 94 5 19 401 1012 1394 PREDICTED: Hydra vulgaris transitional endoplasmic reticulum ATPase (LOC100205318), mRNA blastn 16410 265 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;