RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA674308" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA674308 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7023276 7023276 PRJNA674308_P_NODE_16186_length_241_cov_1.369792_g15951_i0 PRJNA674308 16186 241 1.369792 3.30119872 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 357 4.1099999999999997e-94   NTclustered gi|2651357788|gb|PP174303.1| 41631 g15951 i0 93.388 61.4273858921162 242 14 100 2 1 241 3397 3637 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14804 357 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
7544328 7544328 PRJNA674308_P_NODE_1546_length_807_cov_7.915567_g1355_i0 PRJNA674308 1546 807 7.915567 63.87862569 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 1356 0   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g1355 i0 97.022 51.2552664188352 806 24 99 0 1 806 10 815 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 41363 1356 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
10848991 10848991 PRJNA674308_P_NODE_8269_length_331_cov_1.599291_g8034_i0 PRJNA674308 8269 331 1.599291 5.29365321 Paramecium caudatum 5885 SAR_Eukaryotes SAR_Eukaryotes 126 1.81e-24   NTclustered gi|299830252|ref|NC_014262.1| 5885 g8034 i0 76.357 4.18126888217523 258 48 75 9 1 247 1235 1490 Paramecium caudatum mitochondrion, complete genome blastn 1384 126 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
11369987 11369987 PRJNA674308_P_NODE_14329_length_254_cov_21.639024_g14094_i0 PRJNA674308 14329 254 21.639024 54.96312096 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 425 1.18e-114   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g14094 i0 96.85 9.14566929133858 254 8 100 0 1 254 1531 1784 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 2323 425 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
13920650 13920650 PRJNA674308_P_NODE_46811_length_164_cov_29.052174_g46576_i0 PRJNA674308 46811 164 29.052174 47.64556536 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 303 3.42e-78   NTclustered gi|158147318|gb|EU047813.1| 151077 g46576 i0 100 71.1707317073171 164 0 100 0 1 164 254 91 Chilodonella uncinata strain ATCC 50194 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence; macronuclear blastn 11672 303 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
14673754 14673754 PRJNA674308_P_NODE_2972_length_564_cov_2.429126_g2742_i0 PRJNA674308 2972 564 2.429126 13.70027064 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 833 0   NTclustered gi|347439270|gb|JN111983.1| 151077 g2742 i0 93.451 31.6010638297872 565 32 99 5 1 562 340 902 Chilodonella uncinata strain USA_SC2 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 17823 833 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
15947323 15947323 PRJNA674308_P_NODE_22193_length_210_cov_4.155280_g21958_i0 PRJNA674308 22193 210 4.15528 8.726088 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 366 5.7900000000000005e-97   NTclustered gi|1202135013|gb|KY476314.1| 151077 g21958 i0 98.095 99.6714285714286 210 4 100 0 1 210 297 88 Chilodonella uncinata 18S ribosomal RNA gene, partial sequence blastn 20931 366 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
16469600 16469600 PRJNA674308_P_NODE_7393_length_349_cov_23.080000_g7158_i0 PRJNA674308 7393 349 23.08 80.5492 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 198 4e-46   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g7158 i0 96.639 1.02292263610315 119 4 34 0 1 119 2964 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 357 198 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
17222786 17222786 PRJNA674308_P_NODE_27174_length_192_cov_2.545455_g26939_i0 PRJNA674308 27174 192 2.545455 4.8872736 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 327 2.45e-85   NTclustered gi|1134929563|gb|KY508246.1| 151077 g26939 i0 97.861 15.9739583333333 187 4 97 0 4 190 208 22 Chilodonella uncinata isolate EL small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 3067 327 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;