RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA674308" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA674308 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9573494 9573494 PRJNA674308_P_NODE_7968_length_337_cov_1.444444_g7733_i0 PRJNA674308 7968 337 1.444444 4.86777628 Eucampia zodiacus 444606 SAR_Eukaryotes SAR_Eukaryotes 220 8.24e-53   NTclustered gi|2026158947|ref|NC_054334.1| 444606 g7733 i0 80.769 37.5192878338279 286 51 84 4 45 328 35056 34773 Eucampia zodiacus strain CNS00060 mitochondrion, complete genome blastn 12644 220 1 Eukaryota Sar   Bacillariophyta Mediophyceae Hemiaulales Hemiaulaceae Eucampia Eucampia zodiacus
19771730 19771730 PRJNA674308_P_NODE_44976_length_165_cov_0.896552_g44741_i0 PRJNA674308 44976 165 0.896552 1.4793108 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 300 4.46e-77   NTclustered gi|219112740|ref|XM_002178086.1| 556484 g44741 i0 99.394 1 165 1 100 0 1 165 263 427 Phaeodactylum tricornutum CCAP 1055/1 triose phosphate/phosphate translocator (TPT2), partial mRNA blastn 165 300 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23597818 23597818 PRJNA674308_P_NODE_939_length_1033_cov_5.685976_g799_i0 PRJNA674308 939 1033 5.685976 58.73613208 Nitzschia inconspicua 303405 SAR_Eukaryotes SAR_Eukaryotes 137 2.81e-27   NTclustered gi|2059418728|gb|MW971521.1| 303405 g799 i0 74.005 15.649564375605 377 80 36 15 58 429 21120 20757 Nitzschia inconspicua strain hildebrandi mitochondrion, complete genome blastn 16166 137 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;