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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA674308" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 17 ✖

bioproject 1

  • PRJNA674308 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3718454 3718454 PRJNA674308_P_NODE_9063_length_316_cov_2.520599_g8828_i0 PRJNA674308 9063 316 2.520599 7.96509284 Entamoeba 5758 Evosea other_Eukaryota 183 1.01e-41   NTclustered gi|158940|gb|L02417.1|ENHEF2 5759 g8828 i0 85.475 4.94620253164557 179 22 56 4 119 295 464 288 Entamoeba histolytica translation elongation factor-2 (EF-2) mRNA, complete cds blastn 1563 183 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
9573210 9573210 PRJNA674308_P_NODE_2468_length_624_cov_18.902609_g2245_i0 PRJNA674308 2468 624 18.902609000000002 117.95228016 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 944 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g2245 i0 96.213 59.2596153846154 581 15 92 7 49 624 4 582 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 36978 944 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
10848848 10848848 PRJNA674308_P_NODE_3849_length_489_cov_1.872727_g3615_i0 PRJNA674308 3849 489 1.872727 9.15763503 Dictyostelium purpureum 5786 Evosea other_Eukaryota 377 6.93e-100   NTclustered gi|330791897|ref|XM_003283980.1| 5786 g3615 i0 81.41 49.0531697341513 468 82 96 3 19 485 846 1309 Dictyostelium purpureum 26S proteasome ATPase 2 subunit (DICPUDRAFT_96551), mRNA blastn 23987 377 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
10848859 10848859 PRJNA674308_P_NODE_39669_length_168_cov_0.873950_g39434_i0 PRJNA674308 39669 168 0.87395 1.468236 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 243 7.8e-60   NTclustered gi|470394462|ref|XM_004334945.1| 1257118 g39434 i0 98.54 4.07738095238095 137 2 82 0 1 137 137 1 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_096510), partial mRNA blastn 685 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12124202 12124202 PRJNA674308_P_NODE_49630_length_163_cov_1.350877_g49395_i0 PRJNA674308 49630 163 1.350877 2.20192951 Heterostelium album 2086695 Evosea other_Eukaryota 54.7 0.004   NTclustered gi|1160573070|ref|XM_020576713.1| 670386 g49395 i0 100 0.177914110429448 29 0 18 0 79 107 589 561 Polysphondylium pallidum PN500 Ras guanine nucleotide exchange factor (gefG), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
13398999 13398999 PRJNA674308_P_NODE_54411_length_157_cov_4.953704_g54176_i0 PRJNA674308 54411 157 4.953704 7.77731528 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 263 5.5000000000000005e-66   NTclustered gi|909719645|gb|KT185625.1| 5778 g54176 i0 96.815 1.98726114649682 157 5 100 0 1 157 7046 6890 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 312 263 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13920451 13920451 PRJNA674308_P_NODE_2171_length_671_cov_91.607717_g1959_i0 PRJNA674308 2171 671 91.607717 614.68778107 Cochliopodium 313557 Discosea other_Eukaryota 913 0   NTclustered gi|59876024|gb|AY785057.1| 313998 g1959 i0 91.241 55.6304023845007 685 38 100 18 1 671 47 723 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 37328 913 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel
15947396 15947396 PRJNA674308_P_NODE_3113_length_551_cov_2.071713_g2882_i0 PRJNA674308 3113 551 2.071713 11.41513863 Dictyostelium sp. 5784 Evosea other_Eukaryota 320 1.35e-82   NTclustered gi|2558374474|gb|OP168901.1| 5784 g2882 i0 80.769 59.6370235934664 416 75 75 4 1 415 46451 46040 Dictyostelium sp. voucher DSC<USA-NY>:DBS0350784 mitochondrion, complete genome blastn 32860 320 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium sp.
17222828 17222828 PRJNA674308_P_NODE_31614_length_180_cov_1.274809_g31379_i0 PRJNA674308 31614 180 1.274809 2.2946562 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 263 6.479999999999999e-66   NTclustered gi|300078498|gb|GU001160.1| 5755 g31379 i0 92.222 1.23333333333333 180 14 100 0 1 180 7831 7652 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 222 263 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18497123 18497123 PRJNA674308_P_NODE_35335_length_170_cov_1.677686_g35100_i0 PRJNA674308 35335 170 1.677686 2.8520662 Dictyostelium purpureum 5786 Evosea other_Eukaryota 126 8.26e-25   NTclustered gi|330845265|ref|XM_003294466.1| 5786 g35100 i0 89.109 0.594117647058824 101 11 59 0 39 139 598 698 Dictyostelium purpureum tyrosine-tRNA ligase (DICPUDRAFT_159524), partial mRNA blastn 101 126 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
18497329 18497329 PRJNA674308_P_NODE_8775_length_321_cov_15.360294_g8540_i0 PRJNA674308 8775 321 15.360294 49.30654374 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 459 1.5199999999999996e-124   NTclustered gi|659103927|gb|KJ569727.1| 1512276 g8540 i0 93.291 36.9781931464174 313 17 96 3 13 321 1760 1448 Cochliopodium kieliense clone 9611 18S ribosomal RNA gene, partial sequence blastn 11870 459 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
18497339 18497339 PRJNA674308_P_NODE_9795_length_304_cov_1.545098_g9560_i0 PRJNA674308 9795 304 1.545098 4.69709792 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 540 4.96e-149   NTclustered gi|659103845|gb|KJ569729.1| 1512276 g9560 i0 98.684 99.4243421052632 304 4 100 0 1 304 133 436 Cochliopodium kieliense isolate 2 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 30225 540 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
19771468 19771468 PRJNA674308_P_NODE_14856_length_250_cov_16.641791_g14621_i0 PRJNA674308 14856 250 16.641791 41.6044775 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 357 4.28e-94   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g14621 i0 92.248 54.076 258 11 100 7 1 250 2000 1744 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 13519 357 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
19771737 19771737 PRJNA674308_P_NODE_45336_length_165_cov_0.896552_g45101_i0 PRJNA674308 45336 165 0.896552 1.4793108 Entamoeba dispar 46681 Evosea other_Eukaryota 100 4.86e-17   NTclustered gi|167393759|ref|XM_001740644.1| 370354 g45101 i0 85.417 5.66060606060606 96 14 58 0 1 96 2631 2726 Entamoeba dispar SAW760 DNA-directed RNA polymerase I subunit RPA2, putative (EDI_303700), partial mRNA blastn 934 100 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
19771838 19771838 PRJNA674308_P_NODE_6116_length_384_cov_3.322388_g5881_i0 PRJNA674308 6116 384 3.322388 12.75796992 Cavenderia fasciculata 261658 Evosea other_Eukaryota 56.5 0.003   NTclustered gi|470247590|ref|XM_004366621.1| 261658 g5881 i0 92.308 0.1015625 39 3 10 0 195 233 471 433 Cavenderia fasciculata uncharacterized protein (DFA_02288), partial mRNA blastn 39 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
21047412 21047412 PRJNA674308_P_NODE_49457_length_163_cov_1.789474_g49222_i0 PRJNA674308 49457 163 1.789474 2.91684262 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 231 1.63e-56   NTclustered gi|300078498|gb|GU001160.1| 5755 g49222 i0 92.169 1.01840490797546 166 9 99 3 1 162 5920 5755 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 166 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22844202 22844202 PRJNA674308_P_NODE_54378_length_158_cov_2.752294_g54143_i0 PRJNA674308 54378 158 2.752294 4.34862452 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 292 7.07e-75   NTclustered gi|300078496|gb|GU001158.1| 5778 g54143 i0 100 6.49367088607595 158 0 100 0 1 158 1002 1159 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1026 292 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;