RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA674048" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674048 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1919177 1919177 PRJNA674048_P_NODE_10562_length_288_cov_2.343096_g10359_i0 PRJNA674048 10562 288 2.343096 6.74811648 Caenorhabditis elegans 6239 Nematoda Nematoda 532 7.8e-147   NTclustered gi|1972267169|ref|NM_069484.3| 6239 g10359 i0 100 3 288 0 100 0 1 288 482 195 Caenorhabditis elegans Uncharacterized protein (Y43C5A.4), mRNA blastn 864 532 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3193942 3193942 PRJNA674048_P_NODE_17163_length_214_cov_3.018182_g16960_i0 PRJNA674048 17163 214 3.018182 6.45890948 Caenorhabditis elegans 6239 Nematoda Nematoda 390 3.519999999999999e-104   NTclustered gi|687865476|emb|LK927750.1| 6239 g16960 i0 99.533 2 214 1 100 0 1 214 64875 64662 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000194 blastn 428 390 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
4471108 4471108 PRJNA674048_P_NODE_29744_length_165_cov_2.637931_g29541_i0 PRJNA674048 29744 165 2.637931 4.35258615 Micoletzkya japonica 1250332 Nematoda Nematoda 147 6.149999999999999e-31   NTclustered gi|410992323|gb|JX163990.1| 1250332 g29541 i0 83.439 18.2545454545455 157 26 95 0 7 163 190 34 Micoletzkya japonica large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 3012 147 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Micoletzkya Micoletzkya japonica
7021762 7021762 PRJNA674048_P_NODE_28846_length_167_cov_0.881356_g28643_i0 PRJNA674048 28846 167 0.881356 1.47186452 Caenorhabditis elegans 6239 Nematoda Nematoda 309 7.53e-80   NTclustered gi|687865476|emb|LK927750.1| 6239 g28643 i0 100 2 167 0 100 0 1 167 60812 60646 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000194 blastn 334 309 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17221252 17221252 PRJNA674048_P_NODE_6774_length_384_cov_2.695522_g6571_i0 PRJNA674048 6774 384 2.695522 10.35080448 Sachsia zurstrasseni 1538730 Nematoda Nematoda 106 2.77e-18   NTclustered gi|675118987|gb|KJ877373.1| 1538730 g6571 i0 95.455 1.59114583333333 66 3 17 0 319 384 410 345 Sachsia zurstrasseni large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 611 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Sachsia Sachsia zurstrasseni
18495523 18495523 PRJNA674048_P_NODE_30595_length_164_cov_1.808696_g30392_i0 PRJNA674048 30595 164 1.808696 2.96626144 Loa loa 7209 Nematoda Nematoda 110 8.01e-20   NTclustered gi|1158592910|ref|XM_003138156.2| 7209 g30392 i0 84.211 61.5243902439024 114 17 69 1 45 157 1499 1386 Loa loa pre-mRNA-splicing factor ATP-dependent RNA helicase mRNA blastn 10090 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
19770036 19770036 PRJNA674048_P_NODE_31816_length_163_cov_0.912281_g31613_i0 PRJNA674048 31816 163 0.912281 1.48701803 Strongyloides ratti 34506 Nematoda Nematoda 158 2.8e-34   NTclustered gi|1376143403|ref|XM_024652078.1| 34506 g31613 i0 84.146 84.361963190184 164 24 100 2 1 163 842 680 Strongyloides ratti Elongation factor 1-alpha (SRAE_2000115900), partial mRNA blastn 13751 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;